5WF0
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 23S rRNA | polymer | 2903 | 941548.4 | 1 | GenBank (216643) | Escherichia coli | |
2 | B | 5S rRNA | polymer | 120 | 38813.1 | 1 | GenBank (1199817771) | Escherichia coli | |
3 | C | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (B7MCT2) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60422) In PDB | Escherichia coli | |
4 | D | 50S ribosomal protein L3 | polymer | 208 | 22146.3 | 1 | UniProt (B7MCT5) Pfam (PF00297) UniProt (by SIFTS) (P60438) In PDB | Escherichia coli | |
5 | E | 50S ribosomal protein L4 | polymer | 200 | 21990.4 | 1 | UniProt (B7MCT4) Pfam (PF00573) UniProt (by SIFTS) (P60723) In PDB | Escherichia coli | |
6 | F | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (B7MCS3) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) In PDB | Escherichia coli | |
7 | G | 50S ribosomal protein L6 | polymer | 174 | 18543.2 | 1 | UniProt (B7MCS0) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) In PDB | Escherichia coli | |
8 | H | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (B7MLK8) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (P0A7R1) In PDB | Escherichia coli | |
9 | I | 50S ribosomal protein L11 | polymer | 141 | 14763.2 | 1 | UniProt (B7MIW9) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P0A7J7) In PDB | Escherichia coli | |
10 | J | 50S ribosomal protein L13 | polymer | 141 | 15937.4 | 1 | UniProt (B7MBZ2) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) In PDB | Escherichia coli | |
11 | K | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 1 | UniProt (B7MCS5) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) In PDB | Escherichia coli | |
12 | L | 50S ribosomal protein L15 | polymer | 143 | 14879.4 | 1 | UniProt (A8A5A6) Pfam (PF00828) UniProt (by SIFTS) (P02413) In PDB | Escherichia coli | |
13 | M | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (B7MCS8) Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) In PDB | Escherichia coli | |
14 | N | 50S ribosomal protein L17 | polymer | 119 | 13592.8 | 1 | UniProt (B7MCR0) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) In PDB | Escherichia coli | |
15 | O | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (B7MCR9) Pfam (PF00861) UniProt (by SIFTS) (P0C018) In PDB | Escherichia coli | |
16 | P | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (B7MIU4) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) In PDB | Escherichia coli | |
17 | Q | 50S ribosomal protein L20 | polymer | 115 | 13212.6 | 1 | UniProt (B7MAS6) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) In PDB | Escherichia coli | |
18 | R | 50S ribosomal protein L21 | polymer | 102 | 11515.3 | 1 | UniProt (B7MBV5) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) In PDB | Escherichia coli | |
19 | S | 50S ribosomal protein L22 | polymer | 109 | 12096.2 | 1 | UniProt (B7MCT0) Pfam (PF00237) UniProt (by SIFTS) (P61175) In PDB | Escherichia coli | |
20 | T | 50S ribosomal protein L23 | polymer | 92 | 10415.3 | 1 | UniProt (P0ADZ2) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) In PDB | Escherichia coli | |
21 | U | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (B7L4J5) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) In PDB | Escherichia coli | |
22 | V | 50S ribosomal protein L25 | polymer | 92 | 10511.2 | 1 | UniProt (B7LAK9) Pfam (PF01386) UniProt (by SIFTS) (P68919) In PDB | Escherichia coli | |
23 | W | 50S ribosomal protein L27 | polymer | 75 | 8146.4 | 1 | UniProt (B7MBV4) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8) In PDB | Escherichia coli | |
24 | X | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (B7MFJ8) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) In PDB | Escherichia coli | |
25 | Y | 50S ribosomal protein L29 | polymer | 60 | 7087.3 | 1 | UniProt (B7MCS7) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) In PDB | Escherichia coli | |
26 | Z | 50S ribosomal protein L30 | polymer | 56 | 6223.4 | 1 | UniProt (B7MCR7) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) In PDB | Escherichia coli | |
27 | 0 | 50S ribosomal protein L32 | polymer | 55 | 6203.1 | 1 | UniProt (B7MJ76) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) In PDB | Escherichia coli | |
28 | 1 | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (B7MFJ7) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) In PDB | Escherichia coli | |
29 | 2 | 50S ribosomal protein L34 | polymer | 45 | 5268.3 | 1 | UniProt (B7MGC4) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) In PDB | Escherichia coli | |
30 | 3 | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (B7MAS7) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) In PDB | Escherichia coli | |
31 | 4 | 50S ribosomal protein L36 1 | polymer | 38 | 4377.4 | 1 | UniProt (A8A5A4) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) In PDB | Escherichia coli | |
32 | 5 | 50S ribosomal protein L10 | polymer | 131 | 14112.3 | 1 | UniProt (B7MIX1) Pfam (PF00466) UniProt (by SIFTS) (P0A7J3) In PDB | Escherichia coli | |
33 | 6 | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (B7MI68) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9) In PDB | Escherichia coli | |
34 | a | 16S rRNA | polymer | 1540 | 499239.0 | 1 | GenBank (1114191980) | Escherichia coli | |
35 | b | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (B7MBF0) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) In PDB | Escherichia coli | |
36 | c | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) In PDB | Escherichia coli | |
37 | d | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (B7MCR2) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8) In PDB | Escherichia coli | |
38 | e | 30S ribosomal protein S5 | polymer | 157 | 16532.1 | 1 | UniProt (P0A7W3) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1) In PDB | Escherichia coli | |
39 | f | 30S ribosomal protein S6 | polymer | 100 | 11669.4 | 1 | UniProt (B7NGD4) Pfam (PF01250) UniProt (by SIFTS) (P02358) In PDB | Escherichia coli | |
40 | g | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (B7MCV6) Pfam (PF00177) UniProt (by SIFTS) (P02359) In PDB | Escherichia coli | |
41 | h | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (B7MCS1) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) In PDB | Escherichia coli | |
42 | i | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (B7MBZ1) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) In PDB | Escherichia coli | |
43 | j | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (B7MCT6) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) In PDB | Escherichia coli | |
44 | k | 30S ribosomal protein S11 | polymer | 116 | 12388.1 | 1 | UniProt (B7MCR3) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) In PDB | Escherichia coli | |
45 | l | 30S ribosomal protein S12 | polymer | 121 | 13436.7 | 1 | UniProt (B7MCV7) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3) In PDB | Escherichia coli | |
46 | m | 30S ribosomal protein S13 | polymer | 115 | 12738.9 | 1 | UniProt (P0A7T1) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) In PDB | Escherichia coli | |
47 | n | 30S ribosomal protein S14 | polymer | 101 | 11546.4 | 1 | UniProt (B7MCS2) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) In PDB | Escherichia coli | |
48 | o | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (B7MB86) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) In PDB | Escherichia coli | |
49 | p | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (B7MIU7) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) In PDB | Escherichia coli | |
50 | q | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (B7MCS6) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) In PDB | Escherichia coli | |
51 | r | 30S ribosomal protein S18 | polymer | 65 | 7606.8 | 1 | UniProt (B7MLK7) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) In PDB | Escherichia coli | |
52 | s | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (B7MCT1) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) In PDB | Escherichia coli | |
53 | t | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (B7MAE3) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) In PDB | Escherichia coli | |
54 | u | 30S ribosomal protein S21 | polymer | 65 | 7763.1 | 1 | UniProt (A8A4M2) Pfam (PF01165) UniProt (by SIFTS) (P68679) In PDB | Escherichia coli | |
55 | v, w | tRNA-fMet | polymer | 77 | 24818.9 | 2 | GenBank (817573384) | Escherichia coli | |
56 | x | mRNA | polymer | 12 | 3772.3 | 1 | Escherichia coli | ||
57 | y | Phe-tRNA-Phe | polymer | 76 | 24649.9 | 1 | Escherichia coli | ||
58 | z | Elongation factor Tu 2 | polymer | 393 | 43171.2 | 1 | UniProt (A7ZUJ2) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) UniProt (by SIFTS) (P0CE48) In PDB | Escherichia coli O139:H28 (strain E24377A / ETEC) | EF-Tu 2 |
59 | A | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
60 | A, a, t, B, v... | MAGNESIUM ION | non-polymer | 24.3 | 1480 | Chemie (MG) | |||
61 | a, A | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) | |||
62 | z | PHENYLALANINE | non-polymer | 165.2 | 1 | Chemie (PHE) | |||
63 | z | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
64 | water | water | 18.0 | 676 | Chemie (HOH) |
Sequence modifications
A: 1 - 2903 (GenBank: 216643)
B: 1 - 120 (GenBank: 1199817771)
n: 1 - 101 (UniProt: B7MCS2)
z: 1 - 393 (UniProt: A7ZUJ2)
PDB | External Database | Details |
---|---|---|
5mc 747 | U 2062 | conflict |
G 1723 | A 3038 | conflict |
G 1847 | A 3162 | conflict |
PDB | External Database | Details |
---|---|---|
A 120 | U 306745 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 35 | - | insertion |
PDB | External Database | Details |
---|---|---|
Ala 84 | His 85 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 59 |
Total formula weight | 2260657.1 | |
Non-Polymers* | Number of molecules | 1488 |
Total formula weight | 37032.5 | |
All* | Total formula weight | 2297689.6 |