5W2A
Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dCMPNPP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | DNA polymerase kappa | polymer | 551 | 63287.1 | 2 | UniProt (Q9UBT6) Pfam (PF00817) Pfam (PF11798) Pfam (PF11799) In PDB | Homo sapiens (Human) | DINB protein,DINP |
2 | C, P | DNA (5'-D(P*GP*CP*GP*GP*AP*TP*CP*AP*G)-3') | polymer | 9 | 2780.8 | 2 | unidentified | ||
3 | D, T | DNA (5'-D(*AP*TP*GP*(LDG)P*CP*TP*GP*AP*TP*CP*CP*GP*C)-3') | polymer | 13 | 4247.9 | 2 | unidentified | ||
4 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
5 | A, B, P | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
6 | A, B | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine | non-polymer | 466.2 | 2 | Chemie (0KX) | |||
7 | A, B | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 2 | Chemie (PGE) | |||
8 | water | water | 18.0 | 28 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 526 (UniProt: Q9UBT6)
PDB | External Database | Details |
---|---|---|
Met -24 | - | initiating methionine |
Ser -23 | - | expression tag |
Tyr -22 | - | expression tag |
Tyr -21 | - | expression tag |
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
Asp -14 | - | expression tag |
Tyr -13 | - | expression tag |
Asp -12 | - | expression tag |
Ile -11 | - | expression tag |
Pro -10 | - | expression tag |
Thr -9 | - | expression tag |
Thr -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 140631.5 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 1649.7 | |
All* | Total formula weight | 142281.2 |