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5W2A

Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dCMPNPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 601
ChainResidue
AASP107
AMET108
AASP198
A0KX603

site_idAC2
Number of Residues1
Detailsbinding site for residue GOL A 602
ChainResidue
AGLU302

site_idAC3
Number of Residues15
Detailsbinding site for residue 0KX A 603
ChainResidue
APHE111
ATYR112
ASER137
ATHR138
ATYR141
AARG144
AASP198
ALYS328
AMG601
CDG13
DLDG5
AASP107
AMET108
AASP109
AALA110

site_idAC4
Number of Residues2
Detailsbinding site for residue PGE A 604
ChainResidue
APHE171
AARG175

site_idAC5
Number of Residues4
Detailsbinding site for residue MG B 601
ChainResidue
BASP107
BMET108
BASP198
B0KX604

site_idAC6
Number of Residues1
Detailsbinding site for residue GOL B 602
ChainResidue
BLYS489

site_idAC7
Number of Residues1
Detailsbinding site for residue GOL B 603
ChainResidue
BTYR201

site_idAC8
Number of Residues15
Detailsbinding site for residue 0KX B 604
ChainResidue
BASP107
BMET108
BASP109
BALA110
BPHE111
BTYR112
BSER137
BTHR138
BTYR141
BARG144
BASP198
BLYS328
BMG601
PDG13
TLDG5

site_idAC9
Number of Residues3
Detailsbinding site for residue PGE B 605
ChainResidue
BPHE171
BARG175
TLDG5

site_idAD1
Number of Residues4
Detailsbinding site for residue GOL P 101
ChainResidue
BMET195
PDA12
PDG13
TDT7

site_idAD2
Number of Residues15
Detailsbinding site for Di-nucleotide DG D 4 and LDG D 5
ChainResidue
ATHR44
ASER47
APHE49
ATYR112
ASER134
AMET135
AALA151
APRO153
APHE171
AARG507
A0KX603
CDG13
DDT3
DDC6
DDT7

site_idAD3
Number of Residues14
Detailsbinding site for Di-nucleotide LDG D 5 and DC D 6
ChainResidue
ATYR112
AMET135
AALA151
APHE171
AGLU419
AARG420
ATHR421
AARG507
ALEU508
A0KX603
CDA12
CDG13
DDG4
DDT7

site_idAD4
Number of Residues15
Detailsbinding site for Di-nucleotide DG T 4 and LDG T 5
ChainResidue
BTHR44
BSER47
BPHE49
BTYR112
BSER134
BMET135
BALA151
BPRO153
BARG507
B0KX604
BPGE605
PDG13
TDT3
TDC6
TDT7

site_idAD5
Number of Residues14
Detailsbinding site for Di-nucleotide LDG T 5 and DC T 6
ChainResidue
BTHR421
BARG507
BLEU508
B0KX604
BPGE605
PDA12
PDG13
TDG4
TDT7
BTYR112
BMET135
BALA151
BGLU419
BARG420

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

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PDB entries from 2024-06-12

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