5VYB
Structure of the carbohydrate recognition domain of Dectin-2 complexed with a mammalian-type high mannose Man9GlcNAc2 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | C-type lectin domain family 6 member A | polymer | 147 | 16950.9 | 1 | UniProt (Q6EIG7) Pfam (PF00059) In PDB | Homo sapiens (Human) | C-type lectin superfamily member 10,Dendritic cell-associated C-type lectin 2,Dectin-2 |
| 2 | B | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose | branched | 1153.0 | 1 | In PDB GlyTouCan (G78528AJ) | |||
| 3 | A | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
| 4 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 5 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 6 | water | water | 18.0 | 19 | Chemie (HOH) |
Sequence modifications
A: 64 - 209 (UniProt: Q6EIG7)
| PDB | External Database | Details |
|---|---|---|
| Ala 63 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 16950.9 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1153.0 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 209.3 | |
| All* | Total formula weight | 18313.2 |
