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5VS0

Human DNA polymerase beta 8-oxoG:dC extension with dTTP after 80 s

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase betapolymer34139070.51UniProt (P06746)
Pfam (PF14716)
Pfam (PF10391)
Pfam (PF14792)
Pfam (PF14791)
Homo sapiens (Human)
2B
(D)
DNA (5'-D(P*GP*TP*CP*GP*G)-3')polymer51536.01synthetic construct
3C
(P)
DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*CP*T)-3')polymer113325.21synthetic construct
4D
(T)
DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3')polymer164909.21synthetic construct
5E, F, G, H, M...
(A, P)
MAGNESIUM IONnon-polymer24.36Chemie (MG)
6I, J
(A)
CHLORIDE IONnon-polymer35.52Chemie (CL)
7K
(A)
IMIDAZOLEnon-polymer69.11Chemie (IMD)
8L
(A)
PYROPHOSPHATEnon-polymer178.01Chemie (PPV)
9O, P, Q, R
(A, D, P, T)
waterwater18.0145Chemie (HOH)
Sequence modifications
A: 1 - 335 (UniProt: P06746)
PDBExternal DatabaseDetails
His 336-expression tag
His 337-expression tag
His 338-expression tag
His 339-expression tag
His 340-expression tag
His 341-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight48840.9
Non-Polymers*Number of molecules10
Total formula weight463.8
All*Total formula weight49304.7
*Water molecules are not included.

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PDB entries from 2025-06-11

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