5VPS
Crystal structure of an SDR from Burkholderia ambifaria in complex with NADPH with a TCEP adduct
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Short-chain dehydrogenase/reductase SDR | polymer | 267 | 27644.4 | 1 | UniProt (B1YU47) Pfam (PF13561) In PDB | Burkholderia ambifaria (strain MC40-6) | |
2 | A | [(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]piperidin-4-yl]-tris(3-hydroxy-3-oxopropyl)phosphanium | non-polymer | 998.6 | 1 | Chemie (9G1) | |||
3 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
4 | water | water | 18.0 | 358 | Chemie (HOH) |
Sequence modifications
A: 1 - 259 (UniProt: B1YU47)
PDB | External Database | Details |
---|---|---|
Met -7 | - | expression tag |
Ala -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 27644.4 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 1122.8 | |
All* | Total formula weight | 28767.2 |