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5VPS

Crystal structure of an SDR from Burkholderia ambifaria in complex with NADPH with a TCEP adduct

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2017-05-03
DetectorADSC QUANTUM 315r
Wavelength(s)1.000
Spacegroup nameP 42 21 2
Unit cell lengths64.090, 64.090, 119.170
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.000 - 1.450
R-factor0.149
Rwork0.148
R-free0.16400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5idx
RMSD bond length0.006
RMSD bond angle1.146
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((DEV_2744: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.490
High resolution limit [Å]1.4506.4801.450
Rmerge0.0510.0220.574
Rmeas0.0230.619
Number of reflections448325963280
<I/σ(I)>3076.593.44
Completeness [%]100.099.2100
Redundancy10.1589.0897.15
CC(1/2)1.0001.0000.863
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5290MCSG1 G4 (291317g4): 100mM Potassium tartrate, 20% PEG3350, 8mM NADP, protein conc. 20.8mg/mL, cryo 20% ethylene glycol: puck ID opk4-15

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PDB entries from 2024-07-10

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