5VPP

The 70S P-site tRNA SufA6 complex

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	RA, YA	23S rRNA	polymer	2915	947895.4	2	GenBank (55771382)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2	RB, YB	5S rRNA	polymer	122	39494.5	2	GenBank (55771382)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3	RD, YD	50S ribosomal protein L2	polymer	276	30532.6	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4	RE, YE	50S ribosomal protein L3	polymer	206	22450.2	2	UniProt (Q5SHN8) Pfam (PF00297) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5	RF, YF	50S ribosomal protein L4	polymer	210	23271.9	2	UniProt (Q5SHN9) Pfam (PF00573) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	L1e
6	RG, YG	50S ribosomal protein L5	polymer	182	21061.6	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
7	RH, YH	50S ribosomal protein L6	polymer	180	19568.9	2	UniProt (P0DOY8) Pfam (PF00347) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8	RI, YI	50S ribosomal protein L9	polymer	148	16422.2	2	UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9	RN, YN	50S ribosomal protein L13	polymer	140	15927.9	2	UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10	RO, YO	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11	RP, YP	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12	RQ, YQ	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13	RR, YR	50S ribosomal protein L17	polymer	118	13750.1	2	UniProt (Q9Z9H5) Pfam (PF01196) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14	RS, YS	50S ribosomal protein L18	polymer	112	12639.8	2	UniProt (Q5SHQ4) Pfam (PF00861) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL24
15	RT, YT	50S ribosomal protein L19	polymer	146	17188.8	2	UniProt (P60490) Pfam (PF01245) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16	RU, YU	50S ribosomal protein L20	polymer	118	13779.3	2	UniProt (P60491) Pfam (PF00453) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17	RV, YV	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18	RW, YW	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19	RX, YX	50S ribosomal protein L23	polymer	96	10759.8	2	UniProt (Q5SHP0) Pfam (PF00276) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20	RY, YY	50S ribosomal protein L24	polymer	110	12085.6	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21	RZ, YZ	50S ribosomal protein L25	polymer	206	23238.6	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL5
22	R0, Y0	50S ribosomal protein L27	polymer	85	9529.1	2	UniProt (P60493) Pfam (PF01016) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
23	R1, Y1	50S ribosomal protein L28	polymer	98	11004.2	2	UniProt (P60494) Pfam (PF00830) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
24	R2, Y2	50S ribosomal protein L29	polymer	72	8670.3	2	UniProt (Q5SHP6) Pfam (PF00831) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25	R3, Y3	50S ribosomal protein L30	polymer	60	6799.1	2	UniProt (Q5SHQ6) Pfam (PF00327) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26	R5, Y5	50S ribosomal protein L32	polymer	60	6722.1	2	UniProt (P80339) Pfam (PF01783) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27	R6, Y6	50S ribosomal protein L33	polymer	54	6632.9	2	UniProt (P35871) Pfam (PF00471) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28	R7, Y7	50S ribosomal protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29	R8, Y8	50S ribosomal protein L35	polymer	65	7506.2	2	UniProt (Q5SKU1) Pfam (PF01632) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30	R9, Y9	50S ribosomal protein L36	polymer	37	4435.4	2	UniProt (Q5SHR2) Pfam (PF00444) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Ribosomal protein B
31	QB, XB	30S ribosomal protein S2	polymer	256	29317.7	2	UniProt (P80371) Pfam (PF00318) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32	QC, XC	30S ribosomal protein S3	polymer	239	26751.1	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33	QD, XD	30S ribosomal protein S4	polymer	209	24373.4	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34	QE, XE	30S ribosomal protein S5	polymer	162	17583.4	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35	QF, XF	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TS9
36	QG, XG	30S ribosomal protein S7	polymer	156	18051.0	2	UniProt (P17291) Pfam (PF00177) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
37	QH, XH	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (P0DOY9) Pfam (PF00410) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38	QI, XI	30S ribosomal protein S9	polymer	128	14410.6	2	UniProt (P80374) Pfam (PF00380) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39	QJ, XJ	30S ribosomal protein S10	polymer	105	11955.0	2	UniProt (Q5SHN7) Pfam (PF00338) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40	QK, XK	30S ribosomal protein S11	polymer	129	13737.9	2	UniProt (P80376) Pfam (PF00411) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41	QL, XL	30S ribosomal protein S12	polymer	132	14637.4	2	UniProt (Q5SHN3) Pfam (PF00164) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42	QM, XM	30S ribosomal protein S13	polymer	126	14338.9	2	UniProt (P80377) Pfam (PF00416) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43	QN, XN	30S ribosomal protein S14 type Z	polymer	61	7158.7	2	UniProt (P0DOY6) Pfam (PF00253) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44	QO, XO	30S ribosomal protein S15	polymer	89	10578.4	2	UniProt (Q5SJ76) Pfam (PF00312) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45	QP, XP	30S ribosomal protein S16	polymer	88	10410.0	2	UniProt (Q5SJH3) Pfam (PF00886) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46	QQ, XQ	30S ribosomal protein S17	polymer	105	12325.7	2	UniProt (P0DOY7) Pfam (PF00366) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47	QR, XR	30S ribosomal protein S18	polymer	88	10258.3	2	UniProt (Q5SLQ0) Pfam (PF01084) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48	QT, XT	30S ribosomal protein S20	polymer	106	11736.1	2	UniProt (P80380) Pfam (PF01649) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49	QA, XA	16S rRNA	polymer	1521	493692.2	2	GenBank (55771382)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50	XS, QS	30S ribosomal protein S19	polymer	93	10605.5	2	UniProt (Q5SHP2) Pfam (PF00203) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51	R4, Y4	50S ribosomal protein L31	polymer	71	8300.5	2	UniProt (Q5SJE1) Pfam (PF01197) In PDB	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52	XX, QX	messenger RNA	polymer	19	6163.8	2		synthetic construct
53	XV, QV	P-site tRNA SufA6	polymer	78	25206.0	2	GenBank (1151176235)	Escherichia coli
54	RF, XA, R8, YA, RA...	MAGNESIUM ION	non-polymer		24.3	1315	Chemie (MG)
55	QD, XD, Y9	ZINC ION	non-polymer		65.4	4	Chemie (ZN)

Sequence modifications

QA, XA: 1 - 1544 (GenBank: 55771382)

PDB	External Database	Details
G 458	C 131755	conflict

XV, QV: 1 - 78 (GenBank: 1151176235)

PDB	External Database	Details
1mg 38	-	insertion

Contents of the asymmetric unit

Polymers	Number of chains	106
	Total formula weight	4392923.0
Non-Polymers*	Number of molecules	1319
	Total formula weight	32222.7
All*	Total formula weight	4425145.7

*Water molecules are not included.