5VO0
Structure of a TRAF6-Ubc13~Ub complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, D) | TNF receptor-associated factor 6 | polymer | 172 | 19765.5 | 2 | Pfam (PF00097) Pfam (PF02176) UniProt (by SIFTS) (Q6IWL4) | Danio rerio (Zebrafish) | E3 ubiquitin-protein ligase TRAF6,RING-type E3 ubiquitin transferase TRAF6 |
| 2 | B, E (B, E) | Ubiquitin-conjugating enzyme E2 N | polymer | 157 | 17566.1 | 2 | UniProt (P61088) Pfam (PF00179) | Homo sapiens (Human) | Bendless-like ubiquitin-conjugating enzyme,E2 ubiquitin-conjugating enzyme N,Ubc13,UbcH13,Ubiquitin carrier protein N,Ubiquitin-protein ligase N |
| 3 | C, F (C, F) | Ubiquitin | polymer | 76 | 8576.8 | 2 | UniProt (P0CG47) Pfam (PF00240) | Homo sapiens (Human) | |
| 4 | G, H, I, K, L... (A, D) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 5 | J (A) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) |
Sequence modifications
B, E: 1 - 152 (UniProt: P61088)
| PDB | External Database | Details |
|---|---|---|
| Gly -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Leu -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Lys 87 | Cys 87 | engineered mutation |
| Thr 92 | Lys 92 | engineered mutation |
| Gln 94 | Lys 94 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 91817.0 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 562.4 | |
| All* | Total formula weight | 92379.4 |
