5VFR
Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | U | 26S proteasome non-ATPase regulatory subunit 1 | polymer | 911 | 101263.2 | 1 | UniProt (Q99460) Pfam (PF21505) Pfam (PF01851) Pfam (PF13646) Pfam (PF18004) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN2,26S proteasome regulatory subunit S1,26S proteasome subunit p112 |
2 | V | 26S proteasome non-ATPase regulatory subunit 3 | polymer | 480 | 54755.7 | 1 | UniProt (O43242) Pfam (PF01399) Pfam (PF08375) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN3,26S proteasome regulatory subunit S3,Proteasome subunit p58 |
3 | W | 26S proteasome non-ATPase regulatory subunit 12 | polymer | 456 | 52979.4 | 1 | UniProt (O00232) Pfam (PF22241) Pfam (PF01399) Pfam (PF18098) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN5,26S proteasome regulatory subunit p55 |
4 | X | 26S proteasome non-ATPase regulatory subunit 11 | polymer | 380 | 42868.6 | 1 | UniProt (O00231) Pfam (PF18055) Pfam (PF01399) Pfam (PF18503) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN6,26S proteasome regulatory subunit S9,26S proteasome regulatory subunit p44.5 |
5 | Y | 26S proteasome non-ATPase regulatory subunit 6 | polymer | 378 | 44336.9 | 1 | UniProt (Q15008) Pfam (PF10602) Pfam (PF01399) Pfam (PF21154) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN7,26S proteasome regulatory subunit S10,Breast cancer-associated protein SGA-113M,Phosphonoformate immuno-associated protein 4,Proteasome regulatory particle subunit p44S10,p42A |
6 | Z | 26S proteasome non-ATPase regulatory subunit 7 | polymer | 286 | 32382.1 | 1 | UniProt (P51665) Pfam (PF01398) Pfam (PF13012) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN8,26S proteasome regulatory subunit S12,Mov34 protein homolog,Proteasome subunit p40 |
7 | a | 26S proteasome non-ATPase regulatory subunit 13 | polymer | 373 | 42619.9 | 1 | UniProt (Q9UNM6) Pfam (PF22037) Pfam (PF01399) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN9,26S proteasome regulatory subunit S11,26S proteasome regulatory subunit p40.5 |
8 | b | 26S proteasome non-ATPase regulatory subunit 4 | polymer | 191 | 20866.0 | 1 | UniProt (P55036) Pfam (PF13519) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN10,26S proteasome regulatory subunit S5A,Antisecretory factor 1,ASF,Multiubiquitin chain-binding protein |
9 | c | 26S proteasome non-ATPase regulatory subunit 14 | polymer | 287 | 32329.4 | 1 | UniProt (O00487) Pfam (PF01398) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN11,26S proteasome-associated PAD1 homolog 1 |
10 | d | 26S proteasome non-ATPase regulatory subunit 8 | polymer | 257 | 30039.7 | 1 | UniProt (P48556) Pfam (PF10075) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN12,26S proteasome regulatory subunit S14,p31 |
11 | e | Sem1 | polymer | 70 | 8284.6 | 1 | Pfam (PF05160) UniProt (by SIFTS) (P60896) In PDB | Homo sapiens (Human) | |
12 | G, g | Proteasome subunit alpha type-6 | polymer | 240 | 26727.7 | 2 | UniProt (P60900) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | 27 kDa prosomal protein,p27K,Macropain iota chain,Multicatalytic endopeptidase complex iota chain,Proteasome iota chain |
13 | H, h | Proteasome subunit alpha type-2 | polymer | 232 | 25725.3 | 2 | UniProt (P25787) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain subunit C3,Multicatalytic endopeptidase complex subunit C3,Proteasome component C3 |
14 | I, i | Proteasome subunit alpha type-4 | polymer | 250 | 28118.2 | 2 | UniProt (P25789) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain subunit C9,Multicatalytic endopeptidase complex subunit C9,Proteasome component C9,Proteasome subunit L |
15 | J, j | Proteasome subunit alpha type-7 | polymer | 243 | 27382.2 | 2 | UniProt (O14818) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | Proteasome subunit RC6-1,Proteasome subunit XAPC7 |
16 | K, k | Proteasome subunit alpha type-5 | polymer | 234 | 25570.0 | 2 | UniProt (P28066) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain zeta chain,Multicatalytic endopeptidase complex zeta chain,Proteasome zeta chain |
17 | L, l | Proteasome subunit alpha type-1 | polymer | 238 | 26728.4 | 2 | UniProt (P25786) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | 30 kDa prosomal protein,PROS-30,Macropain subunit C2,Multicatalytic endopeptidase complex subunit C2,Proteasome component C2,Proteasome nu chain |
18 | M, m | Proteasome subunit alpha type-3 | polymer | 245 | 27287.1 | 2 | UniProt (P25788) Pfam (PF10584) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain subunit C8,Multicatalytic endopeptidase complex subunit C8,Proteasome component C8 |
19 | N, n | Proteasome subunit beta type-6 | polymer | 191 | 20471.1 | 2 | UniProt (P28072) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain delta chain,Multicatalytic endopeptidase complex delta chain,Proteasome delta chain,Proteasome subunit Y |
20 | O, o | Proteasome subunit beta type-7 | polymer | 220 | 23745.3 | 2 | UniProt (Q99436) Pfam (PF00227) Pfam (PF12465) In PDB | Homo sapiens (Human) | Macropain chain Z,Multicatalytic endopeptidase complex chain Z,Proteasome subunit Z |
21 | P, p | Proteasome subunit beta type-3 | polymer | 204 | 22841.7 | 2 | UniProt (P49720) Pfam (PF00227) In PDB | Homo sapiens (Human) | Proteasome chain 13,Proteasome component C10-II,Proteasome theta chain |
22 | Q, q | Proteasome subunit beta type-2 | polymer | 199 | 22720.1 | 2 | UniProt (P49721) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain subunit C7-I,Multicatalytic endopeptidase complex subunit C7-I,Proteasome component C7-I |
23 | R, r | Proteasome subunit beta type-5 | polymer | 201 | 22199.1 | 2 | UniProt (P28074) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain epsilon chain,Multicatalytic endopeptidase complex epsilon chain,Proteasome chain 6,Proteasome epsilon chain,Proteasome subunit MB1,Proteasome subunit X |
24 | S, s | Proteasome subunit beta type-1 | polymer | 213 | 23579.0 | 2 | UniProt (P20618) Pfam (PF00227) In PDB | Homo sapiens (Human) | Macropain subunit C5,Multicatalytic endopeptidase complex subunit C5,Proteasome component C5,Proteasome gamma chain |
25 | T, t | Proteasome subunit beta type-4 | polymer | 215 | 23994.3 | 2 | UniProt (P28070) Pfam (PF00227) In PDB | Homo sapiens (Human) | 26 kDa prosomal protein,PROS-26,Macropain beta chain,Multicatalytic endopeptidase complex beta chain,Proteasome beta chain,Proteasome chain 3,HsN3 |
26 | A | 26S proteasome regulatory subunit 7 | polymer | 399 | 44823.5 | 1 | UniProt (P35998) Pfam (PF21236) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | 26S proteasome AAA-ATPase subunit RPT1,Proteasome 26S subunit ATPase 2,Protein MSS1 |
27 | B | 26S proteasome regulatory subunit 4 | polymer | 389 | 43890.2 | 1 | UniProt (P62191) Pfam (PF16450) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | P26s4,26S proteasome AAA-ATPase subunit RPT2,Proteasome 26S subunit ATPase 1 |
28 | C | 26S proteasome regulatory subunit 8 | polymer | 392 | 44034.1 | 1 | UniProt (P62195) Pfam (PF16450) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | 26S proteasome AAA-ATPase subunit RPT6,Proteasome 26S subunit ATPase 5,Proteasome subunit p45,Thyroid hormone receptor-interacting protein 1,TRIP1,p45/SUG |
29 | D | 26S proteasome regulatory subunit 6B | polymer | 380 | 43303.5 | 1 | UniProt (P43686) Pfam (PF16450) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | 26S proteasome AAA-ATPase subunit RPT3,MB67-interacting protein,MIP224,Proteasome 26S subunit ATPase 4,Tat-binding protein 7,TBP-7 |
30 | E | 26S proteasome regulatory subunit 10B | polymer | 375 | 42548.1 | 1 | UniProt (P62333) Pfam (PF16450) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | 26S proteasome AAA-ATPase subunit RPT4,Proteasome 26S subunit ATPase 6,Proteasome subunit p42 |
31 | F | 26S proteasome regulatory subunit 6A | polymer | 396 | 44378.0 | 1 | UniProt (P17980) Pfam (PF16450) Pfam (PF00004) Pfam (PF17862) In PDB | Homo sapiens (Human) | 26S proteasome AAA-ATPase subunit RPT5,Proteasome 26S subunit ATPase 3,Proteasome subunit P50,Tat-binding protein 1,TBP-1 |
32 | f | 26S proteasome non-ATPase regulatory subunit 2 | polymer | 908 | 100313.6 | 1 | UniProt (Q13200) Pfam (PF17781) Pfam (PF01851) Pfam (PF18051) In PDB | Homo sapiens (Human) | 26S proteasome regulatory subunit RPN1,26S proteasome regulatory subunit S2,26S proteasome subunit p97,Protein 55.11,Tumor necrosis factor type 1 receptor-associated protein 2 |
33 | c | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
34 | A, B, D, F | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 4 | Chemie (AGS) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 46 |
Total formula weight | 1520195.1 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 2158.4 | |
All* | Total formula weight | 1522353.5 |