5VDH
Crystal Structure of Human Glycine Receptor alpha-3 Bound to AM-3607, Glycine, and Ivermectin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E | Glycine receptor subunit alpha-3 | polymer | 362 | 41857.4 | 5 | UniProt (O75311) Pfam (PF02931) Pfam (PF02932) In PDB | Homo sapiens (Human) | |
2 | A, B, C, D, E | (3S,3aS,9bS)-2-[(2H-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4H-pyrrolo[3,4-c][1,6]naphthyridin-4-one | non-polymer | 401.4 | 5 | Chemie (7C6) | |||
3 | A, B, C, D, E | GLYCINE | non-polymer | 75.1 | 5 | Chemie (GLY) | |||
4 | A, B, C, D, E | (2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside | non-polymer | 875.1 | 5 | Chemie (IVM) | |||
5 | E, A, B, C, D | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
6 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
7 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
8 | water | water | 18.0 | 56 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 309 (UniProt: O75311)
A, B, C, D, E: 313 - 354 (UniProt: O75311)
A, B, C, D, E: 313 - 354 (UniProt: O75311)
PDB | External Database | Details |
---|---|---|
Ala 310 | - | linker |
Gly 311 | - | linker |
Thr 312 | - | linker |
Trp 355 | - | expression tag |
Ser 356 | - | expression tag |
His 357 | - | expression tag |
Pro 358 | - | expression tag |
Gln 359 | - | expression tag |
Phe 360 | - | expression tag |
Glu 361 | - | expression tag |
Lys 362 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 209287.0 | |
Non-Polymers* | Number of molecules | 22 |
Total formula weight | 7341.7 | |
All* | Total formula weight | 216628.7 |