5VCP
Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Peptide deformylase | polymer | 185 | 20942.8 | 4 | UniProt (Q13XB1) Pfam (PF01327) | Paraburkholderia xenovorans (strain LB400) | PDF, Polypeptide deformylase, BuxeA.00078.a |
| 2 | E, H, L, N (A, B, C, D) | FE (II) ION | non-polymer | 55.8 | 4 | Chemie (FE2) PubChem (27284) | |||
| 3 | F, I, M, O (A, B, C, D) | ACTINONIN | non-polymer | 385.5 | 4 | Chemie (BB2) PubChem (2020) PubChem (6603712) PubChem (10475188) PubChem (44344564) PubChem (59891434) PubChem (443600) PubChem (92209716) PubChem (54472722) PubChem (73895485) PubChem (88936994) PubChem (92209715) PubChem (92209717) PubChem (161727711) | |||
| 4 | G, J, K (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) PubChem (888) | |||
| 5 | P, Q, R, S (A, B, C, D) | water | water | 18.0 | 343 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 177 (UniProt: Q13XB1)
| PDB | External Database | Details |
|---|---|---|
| Met -7 | - | expression tag |
| Ala -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| His -2 | - | expression tag |
| His -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 83771.2 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1838.3 | |
| All* | Total formula weight | 85609.5 |
