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5VCM

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase with bound UDP and Manganese

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferasepolymer41948348.12UniProt (Q10469)
Pfam (PF05060)
Homo sapiens (Human)Beta-1,2-N-acetylglucosaminyltransferase II, GlcNAc-T II, GNT-II, Mannoside acetylglucosaminyltransferase 2, N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II
2C, I
(A, B)
MANGANESE (II) IONnon-polymer54.92Chemie (MN)
PubChem (27854)
3D
(A)
URIDINE-5'-DIPHOSPHATEnon-polymer404.21Chemie (UDP)
PubChem (1158)
PubChem (6031)
PubChem (25323044)
PubChem (25323048)
PubChem (44298965)
PubChem (53486216)
PubChem (60098857)
PubChem (57448939)
PubChem (3084486)
PubChem (91746160)
PubChem (6101632)
PubChem (92332560)
PubChem (92332561)
PubChem (92332562)
PubChem (92332563)
PubChem (93088131)
PubChem (93630083)
PubChem (6604175)
PubChem (11811538)
PubChem (12049241)
4E, F, H, K, L...
(A, B)
DIMETHYL SULFOXIDEnon-polymer78.18Chemie (DMS)
PubChem (679)
5G
(A)
1,2-ETHANEDIOLnon-polymer62.11Chemie (EDO)
6J
(B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
7P, Q
(A, B)
waterwater18.0544Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight96696.2
Non-Polymers*Number of molecules13
Total formula weight1422.4
All*Total formula weight98118.6
*Water molecules are not included.

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PDB entries from 2026-05-06

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