5V8I
Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AB (1A, 2A) | 23S Ribosomal RNA | polymer | 2894 | 941201.2 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 2 | B, BB (1B, 2B) | 5S Ribosomal RNA | polymer | 120 | 38882.2 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 3 | C, CB (1D, 2D) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 4 | D, DB (1E, 2E) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q72I04) Pfam (PF00297) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 5 | E, EB (1F, 2F) | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) UniProt (by SIFTS) (Q72I05) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | L1e |
| 6 | F, FB (1G, 2G) | 50S ribosomal protein L5 | polymer | 182 | 21075.6 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 7 | G, GB (1H, 2H) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 8 | H, HB (1I, 2I) | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 9 | I, IB (1N, 2N) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 10 | J, JB (1O, 2O) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 11 | K, KB (1P, 2P) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 12 | L, LB (1Q, 2Q) | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 2 | UniProt (Q72I11) Pfam (PF00252) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 13 | M, MB (1R, 2R) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 14 | N, NB (1S, 2S) | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q72I20) Pfam (PF00861) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 15 | O, OB (1T, 2T) | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 16 | P, PB (1U, 2U) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (Q72L76) Pfam (PF00453) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 17 | Q, QB (1V, 2V) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 18 | R, RB (1W, 2W) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 19 | S, SB (1X, 2X) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q72I06) Pfam (PF00276) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 20 | T, TB (1Y, 2Y) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 21 | U, UB (1Z, 2Z) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | General stress protein CTC |
| 22 | V, VB (10, 20) | 50S ribosomal protein L27 | polymer | 85 | 9501.1 | 2 | UniProt (Q72HR3) Pfam (PF01016) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 23 | W, WB (11, 21) | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 2 | UniProt (Q72G84) Pfam (PF00830) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 24 | X, XB (12, 22) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 25 | Y, YB (13, 23) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q72I22) Pfam (PF00327) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 26 | Z, ZB (14, 24) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 27 | AA, AC (15, 25) | 50S ribosomal protein L32 | polymer | 60 | 6734.1 | 2 | UniProt (P62652) Pfam (PF01783) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 28 | BA, BC (16, 26) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 29 | CA, CC (17, 27) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus (strain HB27/ATCC BAA-163 / DSM 7039) | |
| 30 | DA, DC (18, 28) | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q72L77) Pfam (PF01632) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 31 | EA, EC (19, 29) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q72I28) Pfam (PF00444) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 32 | FA, FC (1a, 2a) | 16S Ribosomal RNA | polymer | 1522 | 494232.8 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 33 | GA, GC (1b, 2b) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P62662) Pfam (PF00318) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 34 | HA, HC (1c, 2c) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 35 | IA, IC (1d, 2d) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 36 | JA, JC (1e, 2e) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 37 | KA, KC (1f, 2f) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 38 | LA, LC (1g, 2g) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P62667) Pfam (PF00177) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 39 | MA, MC (1h, 2h) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 40 | NA, NC (1i, 2i) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 2 | UniProt (P62669) Pfam (PF00380) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 41 | OA, OC (1j, 2j) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P62653) Pfam (PF00338) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 42 | PA, PC (1k, 2k) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 43 | QA, QC (1l, 2l) | 30S ribosomal protein S12 | polymer | 135 | 14966.8 | 2 | UniProt (H7GHW0) Pfam (PF00164) | Thermus parvatiensis (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 44 | RA, RC (1m, 2m) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 45 | SA, SC (1n, 2n) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P62656) Pfam (PF00253) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 46 | TA, TC (1o, 2o) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P62657) Pfam (PF00312) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 47 | UA, UC (1p, 2p) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 48 | VA, VC (1r, 2r) | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 49 | WA, WC (1s, 2s) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (P62660) Pfam (PF00203) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 50 | XA, XC (1t, 2t) | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 2 | UniProt (P62661) Pfam (PF01649) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 51 | YA, YC (1u, 2u) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62613) Pfam (PF17070) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 52 | ZA, ZC (1y, 2y) | Ribosome-associated inhibitor A | polymer | 113 | 12803.6 | 2 | UniProt (P0AD49) Pfam (PF02482) | Escherichia coli (strain K12) | Protein Y,pY,Ribosome associated factor Y,Spot Y |
| 53 | AD, MAC, OQA, SQA, TBB... (1A, 2B, 18, 1a, 2A...) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 7 | Chemie (MPD) | |||
| 54 | AAA, AAB, AAC, ABA, ABB... (1A, 1a, 2A, 1e, 2B...) | MAGNESIUM ION | non-polymer | 24.3 | 2176 | Chemie (MG) | |||
| 55 | ONA, RLA (1F, 1B) | ARGININE | non-polymer | 175.2 | 2 | Chemie (ARG) | |||
| 56 | EQA, GQA, JQA, KBB, KCC... (14, 15, 16, 1n, 2Y...) | ZINC ION | non-polymer | 65.4 | 12 | Chemie (ZN) | |||
| 57 | EJC, RAB (2d, 1d) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 58 | AKC, ALC, AMC, BKC, BLC... (1R, 1p, 2a, 1T, 1t...) | water | water | 18.0 | 4180 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 104 |
| Total formula weight | 4325054.9 | |
| Non-Polymers* | Number of molecules | 2199 |
| Total formula weight | 55553.5 | |
| All* | Total formula weight | 4380608.4 |
