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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5V8I

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11A, 2A23S Ribosomal RNApolymer2894941201.22GenBank (46197919)Thermus thermophilus HB27
21B, 2B5S Ribosomal RNApolymer12038882.22GenBank (46197919)Thermus thermophilus HB27
31D, 2D50S ribosomal protein L2polymer27630532.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41E, 2E50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
51F, 2F50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
UniProt (by SIFTS) (Q72I05)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)L1e
61G, 2G50S ribosomal protein L5polymer18221075.62UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
71H, 2H50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
81I, 2I50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
91N, 2N50S ribosomal protein L13polymer14015927.92UniProt (Q72IN1)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
101O, 2O50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
111P, 2P50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
121Q, 2Q50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
131R, 2R50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
141S, 2S50S ribosomal protein L18polymer11212639.82UniProt (Q72I20)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
151T, 2T50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
161U, 2U50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
171V, 2V50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
181W, 2W50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
191X, 2X50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
201Y, 2Y50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
211Z, 2Z50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)General stress protein CTC
2210, 2050S ribosomal protein L27polymer859501.12UniProt (Q72HR3)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2311, 2150S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2412, 2250S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2513, 2350S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2614, 2450S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2715, 2550S ribosomal protein L32polymer606734.12UniProt (P62652)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2816, 2650S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
2917, 2750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB27/ATCC BAA-163 / DSM 7039)
3018, 2850S ribosomal protein L35polymer657506.22UniProt (Q72L77)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
3119, 2950S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
321a, 2a16S Ribosomal RNApolymer1522494232.82GenBank (46197919)Thermus thermophilus HB27
331b, 2b30S ribosomal protein S2polymer25629317.72UniProt (P62662)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
341c, 2c30S ribosomal protein S3polymer23926751.12UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
351d, 2d30S ribosomal protein S4polymer20924373.42UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
361e, 2e30S ribosomal protein S5polymer16217583.42UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
371f, 2f30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
381g, 2g30S ribosomal protein S7polymer15618051.02UniProt (P62667)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
391h, 2h30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
401i, 2i30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
411j, 2j30S ribosomal protein S10polymer10511955.02UniProt (P62653)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
421k, 2k30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
431l, 2l30S ribosomal protein S12polymer13514966.82UniProt (H7GHW0)
Pfam (PF00164)
In PDB		Thermus parvatiensis (strain HB27 / ATCC BAA-163 / DSM 7039)
441m, 2m30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
451n, 2n30S ribosomal protein S14 type Zpolymer617158.72UniProt (P62656)
Pfam (PF00253)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
461o, 2o30S ribosomal protein S15polymer8910578.42UniProt (P62657)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
471p, 2p30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
481r, 2r30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
491s, 2s30S ribosomal protein S19polymer9310605.52UniProt (P62660)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
501t, 2t30S ribosomal protein S20polymer10611722.12UniProt (P62661)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
511u, 2u30S ribosomal protein Thxpolymer273350.02UniProt (P62613)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
521y, 2yRibosome-associated inhibitor Apolymer11312803.62UniProt (P0AD49)
Pfam (PF02482)
In PDB		Escherichia coli (strain K12)Protein Y,pY,Ribosome associated factor Y,Spot Y
531A, 2B, 18, 1a, 2A...(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.27Chemie (MPD)
541A, 1a, 2A, 1e, 2B...MAGNESIUM IONnon-polymer24.32176Chemie (MG)
551F, 1BARGININEnon-polymer175.22Chemie (ARG)
5614, 15, 16, 1n, 2Y...ZINC IONnon-polymer65.412Chemie (ZN)
572d, 1dIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
58waterwater18.04180Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains104
Total formula weight4325054.9
Non-Polymers*Number of molecules2199
Total formula weight55553.5
All*Total formula weight4380608.4
*Water molecules are not included.

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PDB entries from 2024-04-24

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