5TZS
Architecture of the yeast small subunit processome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 5' external transcribed spacer | polymer | 364 | 72801.5 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 2 | B (1) | 18S ribosomal RNA | polymer | 1800 | 579761.9 | 1 | GenBank (831416138) | Saccharomyces cerevisiae S288C | |
| 3 | C (2) | U3 snoRNA | polymer | 126 | 37614.8 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 4 | D (3) | 40S ribosomal protein S6-A | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae S288C | RP9,S10,YS4 |
| 5 | E (5) | 40S ribosomal protein S4-A | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Saccharomyces cerevisiae S288C | RP5,S7,YS6 |
| 6 | F (6) | 40S ribosomal protein S5 | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) | Saccharomyces cerevisiae S288C | RP14,S2,YS8 |
| 7 | G (7) | 40S ribosomal protein S7-A | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae S288C | RP30,RP40 |
| 8 | H (8) | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae S288C | RP19,S14,YS9 |
| 9 | I (9) | 40S ribosomal protein S9-A | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae S288C | RP21,S13,YP28,YS11 |
| 10 | J (A) | 5' domain-associated | polymer | 39 | 7602.7 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 11 | K (B) | 3' domain-associated | polymer | 108 | 21133.3 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 12 | L (C) | 40S ribosomal protein S16-A | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae S288C | RP61R |
| 13 | M (D) | 40S ribosomal protein S11-A | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae S288C | RP41,S18,YS12 |
| 14 | N (E) | 40S ribosomal protein S22-A | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae S288C | RP50,S24,YP58,YS22 |
| 15 | O (F) | 40S ribosomal protein S24-A | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae S288C | RP50 |
| 16 | P (G) | 40S ribosomal protein S28-A | polymer | 67 | 7619.9 | 1 | UniProt (Q3E7X9) Pfam (PF01200) | Saccharomyces cerevisiae S288C | S33,YS27 |
| 17 | Q (H) | Utp4 | polymer | 544 | 46315.2 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 18 | R (I) | UtpA_CTD1 | polymer | 176 | 14996.5 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 19 | S, T (J, K) | UtpA_CTD2 | polymer | 107 | 9124.2 | 2 | Saccharomyces cerevisiae S288c (yeast) | ||
| 20 | U (M) | Beta-propeller 2 | polymer | 258 | 21975.0 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 21 | V (N) | Utp17 | polymer | 545 | 46400.3 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 22 | W (O) | Utp1 | polymer | 638 | 54315.1 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 23 | X (P) | Utp6 | polymer | 306 | 26060.0 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 24 | Y (Q) | Utp12 | polymer | 710 | 60442.4 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 25 | Z (R) | Utp13 | polymer | 717 | 61038.2 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 26 | AA (S) | Utp18 | polymer | 250 | 21294.2 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 27 | BA (T) | U3 small nucleolar RNA-associated protein 21,Utp21 | polymer | 781 | 83438.2 | 1 | UniProt (Q06078) Pfam (PF00400) | Saccharomyces cerevisiae S288C | U3 snoRNA-associated protein 21,U three protein 21 |
| 28 | CA (U) | Beta-propeller 5 | polymer | 284 | 24187.7 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 29 | DA (V) | Enp2 | polymer | 263 | 22400.5 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 30 | EA (W) | UtpA_CTD4 | polymer | 104 | 8868.9 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 31 | FA (X) | Kre33 | polymer | 640 | 54485.3 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 32 | GA (Y) | Kre33 | polymer | 641 | 54570.4 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 33 | HA (Z) | Imp3 | polymer | 151 | 12868.9 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 34 | IA (a) | Nop56 | polymer | 312 | 26570.6 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 35 | JA (b) | Nop58 | polymer | 341 | 29038.7 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 36 | KA (c) | Nop1 | polymer | 221 | 18826.1 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 37 | LA (d) | Nop1 | polymer | 216 | 18400.6 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 38 | MA, NA (e, f) | 13 kDa ribonucleoprotein-associated protein | polymer | 126 | 13582.9 | 2 | UniProt (P39990) Pfam (PF01248) | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein 1 |
| 39 | OA (g) | Ribosomal RNA-processing protein 9 | polymer | 573 | 65147.0 | 1 | UniProt (Q06506) Pfam (PF00400) | Saccharomyces cerevisiae S288C | |
| 40 | PA (h) | RNA 3'-terminal phosphate cyclase-like protein | polymer | 367 | 40220.6 | 1 | UniProt (Q08096) Pfam (PF01137) Pfam (PF05189) | Saccharomyces cerevisiae S288C | |
| 41 | QA (i) | Bms1,Ribosome biogenesis protein BMS1,Bms1,Ribosome biogenesis protein BMS1 | polymer | 511 | 46598.3 | 1 | UniProt (Q08965) | Saccharomyces cerevisiae S288c (yeast) | |
| 42 | RA, SA (j, k) | Ribosomal RNA small subunit methyltransferase NEP1 | polymer | 252 | 27936.5 | 2 | UniProt (Q06287) Pfam (PF03587) | Saccharomyces cerevisiae S288C | 18S rRNA (pseudouridine(1189)-N1)-methyltransferase,18S rRNA Psi1189 methyltransferase,Essential for mitotic growth protein 1,Nucleolar essential protein 1 |
| 43 | TA (l) | Utp24 | polymer | 124 | 10571.0 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 44 | UA (m) | Imp4 | polymer | 156 | 13294.4 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 45 | VA (n) | Utp30 | polymer | 160 | 13634.8 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 46 | WA (o) | Unassigned KH domain | polymer | 175 | 14911.4 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 47 | XA (p) | Utp20 | polymer | 924 | 78654.3 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 48 | YA (q) | Repeat protein 2 | polymer | 372 | 31676.9 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 49 | ZA (r) | 40S ribosomal protein S23-A | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae S288C | RP37,S28,YS14 |
| 50 | AB, BB, CB (s, t, u) | Beta-propeller 1 | polymer | 290 | 24698.3 | 3 | Saccharomyces cerevisiae S288c (yeast) | ||
| 51 | DB (v) | Repeat protein 1 | polymer | 580 | 49379.0 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 52 | EB (y) | Unassigned protein helices | polymer | 507 | 43166.2 | 1 | Saccharomyces cerevisiae S288c (yeast) | ||
| 53 | FB (z) | Unassigned RNA helices | polymer | 76 | 14858.3 | 1 | Saccharomyces cerevisiae S288c (yeast) |
Sequence modifications
2: 39 - 265 (PDB: 5TZS)
2: 266 - 333 (PDB: 5TZS)
G: 1 - 67 (UniProt: Q3E7X9)
T: 21 - 673 (UniProt: Q06078)
T: 900 - 1046 (PDB: 5TZS)
i: 68 - 305 (PDB: 5TZS)
i: 547 - 636 (UniProt: Q08965)
i: 704 - 1015 (PDB: 5TZS)
2: 266 - 333 (PDB: 5TZS)
G: 1 - 67 (UniProt: Q3E7X9)
| PDB | External Database | Details |
|---|---|---|
| Ala 17 | Gly 17 | conflict |
T: 900 - 1046 (PDB: 5TZS)
i: 68 - 305 (PDB: 5TZS)
i: 547 - 636 (UniProt: Q08965)
i: 704 - 1015 (PDB: 5TZS)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 2258551.3 | |
| All* | Total formula weight | 2258551.3 |
