5TZ2
Crystal structure of human CD47 ECD bound to Fab of C47B222
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | C47B222 Fab Heavy Chain | polymer | 229 | 24643.6 | 1 | Homo sapiens | ||
| 2 | B (L) | C47B222 Fab Light Chain | polymer | 214 | 23406.1 | 1 | Homo sapiens | ||
| 3 | C (C) | Leukocyte surface antigen CD47 | polymer | 129 | 14764.5 | 1 | UniProt (Q08722) Pfam (PF08204) | Homo sapiens (Human) | Antigenic surface determinant protein OA3,Integrin-associated protein,IAP,Protein MER6 |
| 4 | D, E (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 5 | F (L) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 6 | G, H, I (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 7 | J, K, L (H, L, C) | water | water | 18.0 | 105 | Chemie (HOH) |
Sequence modifications
C: 1 - 123 (UniProt: Q08722)
| PDB | External Database | Details |
|---|---|---|
| Gly 15 | Cys 33 | engineered mutation |
| His 124 | - | expression tag |
| His 125 | - | expression tag |
| His 126 | - | expression tag |
| His 127 | - | expression tag |
| His 128 | - | expression tag |
| His 129 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 62814.2 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 755.7 | |
| All* | Total formula weight | 64418.7 |






