5TFZ
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | dimethylsulfoniopropionate lyase DddK | polymer | 150 | 16611.6 | 2 | UniProt (Q4FNM4) Pfam (PF07883) In PDB | Pelagibacter ubique (strain HTCC1062) | |
2 | A, B | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
3 | A, B | 3-(acryloyloxy)propanoic acid | non-polymer | 144.1 | 2 | Chemie (7BC) | |||
4 | B | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
5 | water | water | 18.0 | 137 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 130 (UniProt: Q4FNM4)
PDB | External Database | Details |
---|---|---|
Met -19 | - | initiating methionine |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
Ser -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Gly -7 | - | expression tag |
Leu -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Arg -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 33223.3 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 724.0 | |
All* | Total formula weight | 33947.3 |