5TFZ
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-09-17 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.352, 54.667, 118.335 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.170 - 2.200 |
R-factor | 0.175 |
Rwork | 0.172 |
R-free | 0.22400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.081 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.170 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.150 | 0.617 |
Number of reflections | 14946 | |
<I/σ(I)> | 9.4 | |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.6 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Potassium thiocyanate, 30% PEG MME 2000 |