5OXD
Complex of a C. perfringens O-GlcNAcase with a fragment hit
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | O-GlcNAcase NagJ | polymer | 590 | 66131.0 | 1 | UniProt (Q0TR53) Pfam (PF02838) Pfam (PF07555) Pfam (PF21774) | Clostridium perfringens | Beta-N-acetylglucosaminidase,Beta-N-acetylhexosaminidase,Beta-hexosaminidase,GH84C,Hexosaminidase B,N-acetyl-beta-D-glucosaminidase |
| 2 | B, C, D, E, F... (A) | CADMIUM ION | non-polymer | 112.4 | 22 | Chemie (CD) | |||
| 3 | X (A) | 5-(trifluoromethyl)-2,3-dihydro-1~{H}-1,4-diazepine | non-polymer | 164.1 | 1 | Chemie (B2W) | |||
| 4 | Y (A) | water | water | 18.0 | 71 | Chemie (HOH) |
Sequence modifications
A: 31 - 618 (UniProt: Q0TR53)
| PDB | External Database | Details |
|---|---|---|
| Gly 29 | - | expression tag |
| Ser 30 | - | expression tag |
| Asp 388 | Asn 388 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 66131.0 | |
| Non-Polymers* | Number of molecules | 23 |
| Total formula weight | 2637.2 | |
| All* | Total formula weight | 68768.2 |
