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5ORG

Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Octopine-binding periplasmic proteinpolymer26327992.92UniProt (P0A4F8)
Pfam (PF00497)
Agrobacterium tumefaciens str. B6
2AA, BA, C, CA, D...
(B, A)
1,2-ETHANEDIOLnon-polymer62.17Chemie (EDO)
3E, F, FA, G, GA...
(A, B)
SODIUM IONnon-polymer23.09Chemie (NA)
4HA, IA, JA, KA, L...
(B, A)
CHLORIDE IONnon-polymer35.514Chemie (CL)
5LA, V
(B, A)
GLYCEROLnon-polymer92.12Chemie (GOL)
6MA, W
(B, A)
octopinenon-polymer246.32Chemie (6DB)
7NA, OA, PA, X, Y...
(B, A)
ACETATE IONnon-polymer59.06Chemie (ACT)
8QA, RA
(A, B)
waterwater18.0243Chemie (HOH)
Sequence modifications
A, B: 21 - 276 (UniProt: P0A4F8)
PDBExternal DatabaseDetails
Met 20-initiating methionine
His 277-expression tag
His 278-expression tag
His 279-expression tag
His 280-expression tag
His 281-expression tag
His 282-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight55985.7
Non-Polymers*Number of molecules40
Total formula weight2168.7
All*Total formula weight58154.4
*Water molecules are not included.

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PDB entries from 2025-12-24

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