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5ORG

Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.

Functional Information from GO Data
ChainGOidnamespacecontents
A0015276molecular_functionligand-gated monoatomic ion channel activity
A0016020cellular_componentmembrane
A0030288cellular_componentouter membrane-bounded periplasmic space
A0034220biological_processmonoatomic ion transmembrane transport
A0042597cellular_componentperiplasmic space
A0071705biological_processnitrogen compound transport
B0015276molecular_functionligand-gated monoatomic ion channel activity
B0016020cellular_componentmembrane
B0030288cellular_componentouter membrane-bounded periplasmic space
B0034220biological_processmonoatomic ion transmembrane transport
B0042597cellular_componentperiplasmic space
B0071705biological_processnitrogen compound transport
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue EDO A 301
ChainResidue
ALYS95
ATHR166
AASP169
AACT322

site_idAC2
Number of Residues1
Detailsbinding site for residue EDO A 302
ChainResidue
ALYS262

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 303
ChainResidue
AVAL184
A6DB321
AGLU30
AGLY32
AGLN159
ASER183

site_idAC4
Number of Residues4
Detailsbinding site for residue NA A 304
ChainResidue
ALEU237
AARG238
AASP241
ALYS245

site_idAC5
Number of Residues5
Detailsbinding site for residue NA A 305
ChainResidue
AASN111
ATHR163
AALA164
A6DB321
AHOH417

site_idAC6
Number of Residues3
Detailsbinding site for residue NA A 306
ChainResidue
AGLY109
AGLY227
AGLY231

site_idAC7
Number of Residues5
Detailsbinding site for residue NA A 307
ChainResidue
AMET116
AASP241
ATHR242
AALA243
AHOH469

site_idAC8
Number of Residues1
Detailsbinding site for residue NA A 308
ChainResidue
ASER132

site_idAC9
Number of Residues2
Detailsbinding site for residue NA A 309
ChainResidue
AACT323
BLYS120

site_idAD1
Number of Residues3
Detailsbinding site for residue CL A 310
ChainResidue
ACYS64
AGLN65
AILE66

site_idAD2
Number of Residues2
Detailsbinding site for residue CL A 311
ChainResidue
AMET20
ASER175

site_idAD3
Number of Residues5
Detailsbinding site for residue CL A 312
ChainResidue
ATRP36
AALA108
AGLY109
AILE110
AASN202

site_idAD4
Number of Residues2
Detailsbinding site for residue CL A 313
ChainResidue
ALYS179
AARG195

site_idAD5
Number of Residues2
Detailsbinding site for residue CL A 314
ChainResidue
AGLU240
ATHR242

site_idAD6
Number of Residues2
Detailsbinding site for residue CL A 316
ChainResidue
ALYS44
AHOH516

site_idAD7
Number of Residues3
Detailsbinding site for residue CL A 317
ChainResidue
AGLN21
ASER149
AASN152

site_idAD8
Number of Residues2
Detailsbinding site for residue CL A 318
ChainResidue
AASP177
AARG195

site_idAD9
Number of Residues1
Detailsbinding site for residue CL A 319
ChainResidue
AGLY42

site_idAE1
Number of Residues3
Detailsbinding site for residue GOL A 320
ChainResidue
APRO125
AGLY126
BLYS270

site_idAE2
Number of Residues18
Detailsbinding site for residue 6DB A 321
ChainResidue
AGLU30
ATYR33
ATRP71
AALA88
AALA89
AMET90
ASER91
AARG96
AGLY109
AASN111
AGLN159
ATHR162
ATHR163
AASN202
APHE230
AVAL233
ANA303
ANA305

site_idAE3
Number of Residues6
Detailsbinding site for residue ACT A 322
ChainResidue
AARG96
ASER161
AEDO301
AHOH418
AHOH457
AHOH479

site_idAE4
Number of Residues3
Detailsbinding site for residue ACT A 323
ChainResidue
ALYS182
ANA309
BLYS120

site_idAE5
Number of Residues3
Detailsbinding site for residue ACT A 324
ChainResidue
AVAL67
AALA68
AHOH449

site_idAE6
Number of Residues6
Detailsbinding site for residue EDO B 301
ChainResidue
AGLN69
AASN70
ALYS82
BGLY117
BASP118
BACT314

site_idAE7
Number of Residues3
Detailsbinding site for residue EDO B 302
ChainResidue
BGLN69
BLYS82
BHOH456

site_idAE8
Number of Residues1
Detailsbinding site for residue EDO B 303
ChainResidue
BLYS142

site_idAE9
Number of Residues6
Detailsbinding site for residue EDO B 304
ChainResidue
AHOH496
BGLU214
BHOH428
AHOH410
AHOH416
AHOH492

site_idAF1
Number of Residues2
Detailsbinding site for residue EDO B 305
ChainResidue
BCYS64
BILE66

site_idAF2
Number of Residues5
Detailsbinding site for residue NA B 306
ChainResidue
BGLY112
BPHE113
BVAL221
BGLY222
BPRO223

site_idAF3
Number of Residues5
Detailsbinding site for residue NA B 307
ChainResidue
BVAL115
BMET116
BASP197
BHOH418
BHOH488

site_idAF4
Number of Residues2
Detailsbinding site for residue CL B 308
ChainResidue
BSER132
BSER135

site_idAF5
Number of Residues2
Detailsbinding site for residue CL B 309
ChainResidue
BVAL271
BASP272

site_idAF6
Number of Residues4
Detailsbinding site for residue CL B 310
ChainResidue
ALYS212
BGLY31
BPHE38
BSER39

site_idAF7
Number of Residues4
Detailsbinding site for residue CL B 311
ChainResidue
BGLY40
BPRO41
BGLY42
BLYS44

site_idAF8
Number of Residues4
Detailsbinding site for residue GOL B 312
ChainResidue
BGLU240
BASP241
BALA243
BLEU244

site_idAF9
Number of Residues16
Detailsbinding site for residue 6DB B 313
ChainResidue
BGLU30
BTYR33
BTRP71
BALA88
BALA89
BMET90
BSER91
BARG96
BGLY109
BASN111
BGLN159
BTHR162
BTHR163
BASN202
BPHE230
BVAL233

site_idAG1
Number of Residues6
Detailsbinding site for residue ACT B 314
ChainResidue
ALYS82
BLYS216
BGLY217
BLYS219
BEDO301
BHOH416

site_idAG2
Number of Residues5
Detailsbinding site for residue ACT B 315
ChainResidue
BLYS81
BASP138
BARG238
BGLU240
BASP241

site_idAG3
Number of Residues4
Detailsbinding site for residue ACT B 316
ChainResidue
BARG96
BSER161
BTHR162
BHOH457

Functional Information from PROSITE/UniProt
site_idPS01039
Number of Residues14
DetailsSBP_BACTERIAL_3 Bacterial extracellular solute-binding proteins, family 3 signature. GFEIDLANaLCEKM
ChainResidueDetails
AGLY47-MET60

246704

PDB entries from 2025-12-24

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