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5ON9

Crystal structure of NikA in complex with reduced Fe-L1 (N-(2-hydroxybenzyl)-N'-(2-thiomethylbenzyl)-N,N'-ethylenediamine diacetic acid)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Nickel-binding periplasmic proteinpolymer50256360.72UniProt (P33590)
Pfam (PF00496)
Escherichia coli (strain K12)
2C, O
(A, B)
FE (III) IONnon-polymer55.82Chemie (FE)
3D, P
(A, B)
2-[2-[2-hydroxy-2-oxoethyl-[(3-methoxy-2-oxidanyl-phenyl)methyl]amino]ethyl-[(2-methylsulfanylphenyl)methyl]amino]ethanoic acidnon-polymer448.52Chemie (9YH)
4E, S
(A, B)
2,3-DIHYDROXY-1,4-DITHIOBUTANEnon-polymer154.32Chemie (DTT)
5F, I, J, K, L...
(A, B)
GLYCEROLnon-polymer92.19Chemie (GOL)
6G
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
7H, N, T, U, V
(A, B)
ACETATE IONnon-polymer59.05Chemie (ACT)
8X, Y
(A, B)
waterwater18.01081Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight112721.5
Non-Polymers*Number of molecules21
Total formula weight2476.8
All*Total formula weight115198.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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