5OHJ
Human phosphodiesterase 4B catalytic domain in complex with a pyrrolidinyl inhibitor.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | polymer | 421 | 48442.7 | 2 | UniProt (Q07343) Pfam (PF18100) Pfam (PF00233) | Homo sapiens (Human) | DPDE4,PDE32 |
| 2 | C, F (A, B) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 3 | D, G (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 4 | E, H (A, B) | [(1~{S})-2-[3,5-bis(chloranyl)-1-oxidanyl-pyridin-1-ium-4-yl]-1-[4-[bis(fluoranyl)methoxy]-3-(cyclopropylmethoxy)phenyl]ethyl] (2~{S})-1-[3-(dimethylcarbamoyl)phenyl]sulfonylpyrrolidine-2-carboxylate | non-polymer | 729.6 | 2 | Chemie (9VE) | |||
| 5 | I, J (A, B) | water | water | 18.0 | 165 | Chemie (HOH) |
Sequence modifications
A, B: 246 - 659 (UniProt: Q07343)
| PDB | External Database | Details |
|---|---|---|
| Met 245 | - | initiating methionine |
| Lys 295 | Ser 290 | conflict |
| Val 296 | Pro 291 | conflict |
| - | Gln 293 | deletion |
| - | Lys 294 | deletion |
| - | Asp 295 | deletion |
| - | Arg 296 | deletion |
| - | Glu 297 | deletion |
| Ala 298 | Lys 298 | conflict |
| Glu 299 | Lys 299 | conflict |
| Glu 300 | Lys 300 | conflict |
| Ala 301 | Lys 301 | conflict |
| Pro 302 | Gln 302 | conflict |
| Pro 304 | Leu 304 | conflict |
| His 660 | - | expression tag |
| His 661 | - | expression tag |
| His 662 | - | expression tag |
| His 663 | - | expression tag |
| His 664 | - | expression tag |
| His 665 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 96885.4 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1638.6 | |
| All* | Total formula weight | 98524.0 |






