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5O2E

Crystal structure of NDM-1 in complex with hydrolyzed cefuroxime - new refinement

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer24225631.82UniProt (C7C422)
Pfam (PF00753)
Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, D, I, J
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
4F, K
(A, B)
(2R,5S)-5-[(carbamoyloxy)methyl]-2-[(R)-carboxy{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acidnon-polymer442.42Chemie (3S0)
5G, H
(A, B)
UNKNOWN LIGANDnon-polymer35.52Chemie (UNL)
6L, M
(A, B)
waterwater18.0676Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51263.6
Non-Polymers*Number of molecules9
Total formula weight1313.4
All*Total formula weight52577.0
*Water molecules are not included.

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PDB entries from 2025-06-11

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