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5O2E

Crystal structure of NDM-1 in complex with hydrolyzed cefuroxime - new refinement

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 301
ChainResidue
AHIS120
AHIS122
AHIS189
A3S0304
AHOH438

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 302
ChainResidue
AHOH438
AASP124
ACYS208
AHIS250
A3S0304

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 A 303
ChainResidue
AARG270
AHOH593

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN B 302
ChainResidue
BHIS120
BHIS122
BHIS189
B3S0304
BHOH459

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN B 303
ChainResidue
BASP124
BCYS208
BHIS250
B3S0304
BHOH459

site_idAC6
Number of Residues21
Detailsbinding site for residues 3S0 A 304 and UNL A 305
ChainResidue
ALEU65
AMET67
ATRP93
AHIS122
AGLN123
AASP124
AGLU152
AHIS189
ACYS208
ALYS211
AGLY219
AASN220
AHIS250
AZN301
AZN302
AHOH438
AHOH586
BPRO68
BGLY69
BPHE70
BHOH601

site_idAC7
Number of Residues16
Detailsbinding site for residues UNL B 301 and 3S0 B 304
ChainResidue
AGLY69
APHE70
BLEU65
BHIS122
BGLN123
BASP124
BHIS189
BCYS208
BLYS211
BGLY219
BASN220
BHIS250
BZN302
BZN303
BHOH459
BHOH599

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171, ECO:0000269|PubMed:25815530
ChainResidueDetails
AHIS120
BHIS189
BCYS208
BHIS250
AHIS122
AASP124
AHIS189
ACYS208
AHIS250
BHIS120
BHIS122
BASP124

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171
ChainResidueDetails
ALYS211
AASN220
BLYS211
BASN220

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PDB entries from 2025-06-11

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