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5NRL

Structure of a pre-catalytic spliceosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(2)
U2 snRNApolymer1175376267.41GenBank (536627)Saccharomyces cerevisiae
2B
(3)
U6 snRNA-associated Sm-like protein LSm3polymer8910039.31UniProt (P57743)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)SmX4 protein
3C
(4)
U4 snRNApolymer16051186.01GenBank (1039024031)Saccharomyces cerevisiae
4D
(5)
U5 snRNApolymer21468643.31GenBank (1039024040)Saccharomyces cerevisiae
5E
(6)
U6 snRNApolymer11235883.21GenBank (1039023280)Saccharomyces cerevisiae
6F
(7)
U6 snRNA-associated Sm-like protein LSm7polymer11513027.01UniProt (P53905)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)
7G
(8)
U6 snRNA-associated Sm-like protein LSm8polymer10912403.41UniProt (P47093)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)
8H
(A)
Pre-mRNA-splicing factor 8polymer2413279867.51UniProt (P33334)
Pfam (PF08084)
Pfam (PF08082)
Pfam (PF08083)
Pfam (PF10598)
Pfam (PF10597)
Pfam (PF10596)
Pfam (PF12134)
Saccharomyces cerevisiae (Baker's yeast)
9I
(B)
Pre-mRNA-splicing helicase BRR2polymer2163246470.31UniProt (P32639)
Pfam (PF21188)
Pfam (PF18149)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF02889)
Saccharomyces cerevisiae (Baker's yeast)Protein Snu246
10J
(C)
Pre-mRNA-splicing factor SNU114polymer1008114174.01UniProt (P36048)
Pfam (PF16004)
Pfam (PF00009)
Pfam (PF03764)
Pfam (PF00679)
Saccharomyces cerevisiae (Baker's yeast)114 kDa U5 small nuclear ribonucleoprotein component,Growth inhibitory protein 10
11K
(D)
Spliceosomal protein DIB1polymer14316798.41UniProt (Q06819)
Pfam (PF02966)
Saccharomyces cerevisiae (Baker's yeast)
12L
(E)
66 kDa U4/U6.U5 small nuclear ribonucleoprotein componentpolymer58766544.01UniProt (Q12420)
Pfam (PF19252)
Pfam (PF03343)
Saccharomyces cerevisiae (Baker's yeast)
13M
(F)
Pre-mRNA-processing factor 31polymer49456382.51UniProt (P49704)
Pfam (PF01798)
Pfam (PF09785)
Saccharomyces cerevisiae (Baker's yeast)
14N
(G)
U4/U6 small nuclear ribonucleoprotein PRP3polymer46955974.31UniProt (Q03338)
Pfam (PF08572)
Pfam (PF06544)
Saccharomyces cerevisiae (Baker's yeast)Pre-mRNA-splicing factor 3
15O
(H)
U4/U6 small nuclear ribonucleoprotein PRP4polymer46552507.01UniProt (P20053)
Pfam (PF00400)
Saccharomyces cerevisiae (Baker's yeast)Pre-mRNA-processing protein 4
16P
(I)
Yeast UBC4 gene for ubiquitin-conjugating enzymepolymer9530200.71GenBank (4718)Saccharomyces cerevisiae
17Q
(J)
Pre-mRNA-splicing factor 6polymer899104370.11UniProt (P19735)
Pfam (PF06424)
Saccharomyces cerevisiae (Baker's yeast)
18R
(K)
13 kDa ribonucleoprotein-associated proteinpolymer12613582.91UniProt (P39990)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)Small nuclear ribonucleoprotein-associated protein 1
19S
(L)
23 kDa U4/U6.U5 small nuclear ribonucleoprotein componentpolymer19422717.81UniProt (Q12368)
Pfam (PF12874)
Saccharomyces cerevisiae (Baker's yeast)
20T
(M)
Pre-mRNA-splicing factor 38polymer24227995.61UniProt (Q00723)
Pfam (PF03371)
Saccharomyces cerevisiae (Baker's yeast)Pre-mRNA-processing factor 38
21U
(N)
Pre-mRNA-splicing factor SPP381polymer29133830.91UniProt (P38282)Saccharomyces cerevisiae (Baker's yeast)Suppressor of PRP38-1 mutation
22V
(O)
U2 snRNP component HSH155polymer971110166.71UniProt (P49955)
Pfam (PF22646)
Saccharomyces cerevisiae (Baker's yeast)
23W
(P)
Pre-mRNA-splicing factor RSE1polymer1361153956.81UniProt (Q04693)
Pfam (PF10433)
Pfam (PF03178)
Saccharomyces cerevisiae (Baker's yeast)RNA splicing and ER to Golgi transport factor 1,Spliceosome-associated protein 130
24X
(Q)
Cold sensitive U2 snRNA suppressor 1polymer43550210.71UniProt (Q02554)
Pfam (PF04037)
Pfam (PF04046)
Saccharomyces cerevisiae (Baker's yeast)
25Y
(R)
Protein HSH49polymer21324534.21UniProt (Q99181)
Pfam (PF00076)
Saccharomyces cerevisiae (Baker's yeast)
26Z
(S)
Pre-mRNA-splicing factor RDS3polymer10712283.61UniProt (Q06835)
Pfam (PF03660)
Saccharomyces cerevisiae (Baker's yeast)Regulator of drug sensitivity 3
27AA
(T)
Pre-mRNA-splicing factor PRP9polymer53063126.41UniProt (P19736)
Pfam (PF16958)
Pfam (PF16837)
Pfam (PF12171)
Pfam (PF11931)
Saccharomyces cerevisiae (Baker's yeast)
28BA
(U)
Pre-mRNA-splicing factor PRP11polymer26629962.81UniProt (Q07350)
Pfam (PF12874)
Pfam (PF16835)
Saccharomyces cerevisiae (Baker's yeast)
29CA
(V)
Pre-mRNA-splicing factor PRP21polymer28033111.51UniProt (P32524)
Pfam (PF01805)
Pfam (PF12230)
Saccharomyces cerevisiae (Baker's yeast)
30DA
(W)
U2 small nuclear ribonucleoprotein A'polymer23827232.31UniProt (Q08963)
Pfam (PF14580)
Saccharomyces cerevisiae (Baker's yeast)U2 snRNP A',Looks exceptionally like U2A protein 1
31EA
(X)
Unknownpolymer1117907.61Saccharomyces cerevisiae
32FA
(Y)
U2 small nuclear ribonucleoprotein B''polymer11112850.91UniProt (P40567)
Pfam (PF13893)
Saccharomyces cerevisiae (Baker's yeast)U2 snRNP B''
33GA
(Z)
RDS3 complex subunit 10polymer8510045.41UniProt (P0C074)
Pfam (PF07189)
Saccharomyces cerevisiae (Baker's yeast)Splicing factor 3b subunit
34HA
(a)
U6 snRNA-associated Sm-like protein LSm2polymer9511177.91UniProt (P38203)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)Small nuclear ribonucleoprotein D homolog SNP3
35IA, QA, YA
(b, k, s)
Small nuclear ribonucleoprotein-associated protein Bpolymer19622427.03UniProt (P40018)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)snRNP-B,Sm protein B,SmB
36BB, JA, TA
(d, n, v)
Small nuclear ribonucleoprotein Sm D3polymer10111240.13UniProt (P43321)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Sm-D3,snRNP core protein D3
37CB, KA, VA
(e, p, w)
Small nuclear ribonucleoprotein Epolymer9410385.13UniProt (Q12330)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)snRNP-E,Sm protein E,SmE
38DB, LA, WA
(f, q, x)
Small nuclear ribonucleoprotein Fpolymer869669.93UniProt (P54999)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)snRNP-F,Sm protein F,SmF
39EB, MA, XA
(g, r, y)
Small nuclear ribonucleoprotein Gpolymer778490.83UniProt (P40204)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)snRNP-G,Sm protein G,SmG
40NA, RA, ZA
(h, l, t)
Small nuclear ribonucleoprotein Sm D1polymer14616296.83UniProt (Q02260)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Sm-D1,snRNP core protein D1
41AB, OA, SA
(i, m, u)
Small nuclear ribonucleoprotein Sm D2polymer11012876.13UniProt (Q06217)
Pfam (PF01423)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Sm-D2,snRNP core protein D2
42PA
(j)
U6 snRNA-associated Sm-like protein LSm4polymer18721298.11UniProt (P40070)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)
43UA
(o)
U6 snRNA-associated Sm-like protein LSm5polymer9310433.01UniProt (P40089)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)
44FB
(z)
U6 snRNA-associated Sm-like protein LSm6polymer869406.61UniProt (A6ZYX7)
Pfam (PF01423)
Saccharomyces cerevisiae (Baker's yeast)
45GB
(C)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
46HB, IB, JB, KB, LB...
(L, S, T, U)
ZINC IONnon-polymer65.47Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2550727.6
Non-Polymers*Number of molecules8
Total formula weight981.0
All*Total formula weight2551708.6
*Water molecules are not included.

246905

PDB entries from 2025-12-31

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