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5NP6

70S structure prior to bypassing

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
mRNApolymer299325.61Escherichia coli
2B
(B)
P-site tRNA-Glypolymer7624490.61Escherichia coli
3C
(C)
DNA topoisomerase small subunitpolymer465234.01UniProt (P23992)Enterobacteria phage T4Protein Gp60
4D
(D)
16S ribosomal RNApolymer1539498909.81GenBank (1095872043)Escherichia coli
5E
(E)
30S ribosomal protein S2polymer21824253.91UniProt (P0A7V0)
Pfam (PF00318)
Escherichia coli (strain K12)Small ribosomal subunit protein uS2
6F
(F)
30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
Escherichia coli (strain K12)Small ribosomal subunit protein uS3
7G
(G)
30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF01479)
Pfam (PF00163)
Escherichia coli (strain K12)Small ribosomal subunit protein uS4
8H
(H)
30S ribosomal protein S5polymer15716532.11UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
Escherichia coli (strain K12)Small ribosomal subunit protein uS5
9I
(I)
30S ribosomal protein S6polymer10011669.41UniProt (P02358)
Pfam (PF01250)
Escherichia coli (strain K12)Small ribosomal subunit protein bS6
10J
(J)
30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
Escherichia coli (strain K12)Small ribosomal subunit protein uS7
11K
(K)
30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
Escherichia coli (strain K12)Small ribosomal subunit protein uS8
12L
(L)
30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
Escherichia coli (strain K12)Small ribosomal subunit protein uS9
13M
(M)
30S ribosomal protein S10polymer9811197.01UniProt (P0A7R5)
Pfam (PF00338)
Escherichia coli (strain K12)Small ribosomal subunit protein uS10
14N
(N)
30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
Escherichia coli (strain K12)Small ribosomal subunit protein uS11
15O
(O)
30S ribosomal protein S12polymer12313637.01UniProt (P0A7S3)
Pfam (PF00164)
Escherichia coli (strain K12)Small ribosomal subunit protein uS12
16P
(P)
30S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
Escherichia coli (strain K12)Small ribosomal subunit protein uS13
17Q
(Q)
30S ribosomal protein S14polymer10111546.41UniProt (P0AG59)
Pfam (PF00253)
Escherichia coli (strain K12)Small ribosomal subunit protein uS14
18R
(R)
30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
Escherichia coli (strain K12)Small ribosomal subunit protein uS15
19S
(S)
30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
Escherichia coli (strain K12)Small ribosomal subunit protein bS16
20T
(T)
30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
Escherichia coli (strain K12)Small ribosomal subunit protein uS17
21U
(U)
30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
Escherichia coli (strain K12)Small ribosomal subunit protein bS18
22V
(V)
30S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
Escherichia coli (strain K12)Small ribosomal subunit protein uS19
23W
(W)
30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
Escherichia coli (strain K12)Small ribosomal subunit protein bS20
24X
(X)
30S ribosomal protein S21polymer657763.11UniProt (P68679)
Pfam (PF01165)
Escherichia coli (strain K12)Small ribosomal subunit protein bS21
25Y
(Y)
23S ribosomal RNApolymer2903941544.41GenBank (802133627)Escherichia coli
26Z
(Z)
5S ribosomal RNApolymer12038813.11GenBank (1146054517)Escherichia coli
27AA
(a)
50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
Escherichia coli (strain K12)Large ribosomal subunit protein uL2
28BA
(b)
50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
Escherichia coli (strain K12)Large ribosomal subunit protein uL3
29CA
(c)
50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
Escherichia coli (strain K12)Large ribosomal subunit protein uL4
30DA
(d)
50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
Escherichia coli (strain K12)Large ribosomal subunit protein uL5
31EA
(e)
50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
Escherichia coli (strain K12)Large ribosomal subunit protein uL6
32FA
(f)
50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
Escherichia coli (strain K12)Large ribosomal subunit protein bL9
33GA
(g)
50S ribosomal protein L11polymer14114763.21UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
Escherichia coli (strain K12)Large ribosomal subunit protein uL11
34HA
(h)
50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
Escherichia coli (strain K12)Large ribosomal subunit protein uL13
35IA
(i)
50S ribosomal protein L14polymer12213451.91UniProt (P0ADY3)
Pfam (PF00238)
Escherichia coli (strain K12)Large ribosomal subunit protein uL14
36JA
(j)
50S ribosomal protein L15polymer14314877.31UniProt (P02413)
Pfam (PF00828)
Escherichia coli (strain K12)Large ribosomal subunit protein uL15
37KA
(k)
50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
Escherichia coli (strain K12)Large ribosomal subunit protein uL16
38LA
(l)
50S ribosomal protein L17polymer12013721.91UniProt (P0AG44)
Pfam (PF01196)
Escherichia coli (strain K12)Large ribosomal subunit protein bL17
39MA
(m)
50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
Escherichia coli (strain K12)Large ribosomal subunit protein uL18
40NA
(n)
50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
Escherichia coli (strain K12)Large ribosomal subunit protein bL19
41OA
(o)
50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
Escherichia coli (strain K12)Large ribosomal subunit protein bL20
42PA
(p)
50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
Escherichia coli (strain K12)Large ribosomal subunit protein bL21
43QA
(q)
50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
Escherichia coli (strain K12)Large ribosomal subunit protein uL22
44RA
(r)
50S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
Escherichia coli (strain K12)Large ribosomal subunit protein uL23
45SA
(s)
50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
Escherichia coli (strain K12)Large ribosomal subunit protein uL24
46TA
(t)
50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
Escherichia coli (strain K12)Large ribosomal subunit protein bL25
47UA
(u)
50S ribosomal protein L27polymer758174.41UniProt (P0A7L8)
Pfam (PF01016)
Escherichia coli (strain K12)Large ribosomal subunit protein bL27
48VA
(v)
50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
Escherichia coli (strain K12)Large ribosomal subunit protein bL28
49WA
(w)
50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
Escherichia coli (strain K12)Large ribosomal subunit protein uL29
50XA
(x)
50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
Escherichia coli (strain K12)Large ribosomal subunit protein uL30
51YA
(y)
50S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
Escherichia coli (strain K12)Large ribosomal subunit protein bL32
52ZA
(z)
50S ribosomal protein L33polymer505814.81UniProt (P0A7N9)
Pfam (PF00471)
Escherichia coli (strain K12)Large ribosomal subunit protein bL33
53AB
(0)
50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
Escherichia coli (strain K12)Large ribosomal subunit protein bL34
54BB
(1)
50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
Escherichia coli (strain K12)Large ribosomal subunit protein bL35,Ribosomal protein A
55CB
(2)
50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
Escherichia coli (strain K12)Large ribosomal subunit protein bL36-A,Ribosomal protein B
56DB
(3)
50S ribosomal protein L10polymer13114112.31UniProt (P0A7J3)
Pfam (PF00466)
Escherichia coli (strain K12)50S ribosomal protein L8,Large ribosomal subunit protein uL10
57EB
(4)
50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
Escherichia coli (strain K12)Large ribosomal subunit protein bL31-A
Sequence modifications
Q: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
Y: 1 - 2903 (GenBank: 802133627)
PDBExternal DatabaseDetails
5mc 747U 2724742conflict
A 887U 2724602conflict
G 1847A 2723642conflict
Z: 1 - 120 (GenBank: 1146054517)
PDBExternal DatabaseDetails
A 120U 228875conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2180309.4
All*Total formula weight2180309.4
*Water molecules are not included.

237423

PDB entries from 2025-06-11

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