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5NL0

Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E, K
(A, E, K)
Histone H3.2polymer13515303.93UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F, L
(B, F, L)
Histone H4polymer10211263.23UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G, M
(C, G, M)
Histone H2A type 1polymer12913978.23UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D, H, N
(D, H, N)
Histone H2B 1.1polymer12213524.83UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I, O
(I, S)
DNA (197-MER)polymer19760824.82synthetic construct
6J, P
(J, T)
DNA (197-MER)polymer19760815.82synthetic construct
7Q
(Z)
Histone H1.0-Bpolymer19621129.51UniProt (P22844)
Pfam (PF00538)
Xenopus laevis (African clawed frog)H1-SA,H1D,Histone H1(0)-2,Histone H5A,XlH5A
Sequence modifications
A, E, K: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
C, G, M: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100conflict
Ser 123Ala 124conflict
D, H, N: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains17
Total formula weight426621.0
All*Total formula weight426621.0
*Water molecules are not included.

237423

PDB entries from 2025-06-11

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