5NL0
Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, K | Histone H3.2 | polymer | 135 | 15303.9 | 3 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | |
2 | B, F, L | Histone H4 | polymer | 102 | 11263.2 | 3 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (African clawed frog) | |
3 | C, G, M | Histone H2A type 1 | polymer | 129 | 13978.2 | 3 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (African clawed frog) | |
4 | D, H, N | Histone H2B 1.1 | polymer | 122 | 13524.8 | 3 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
5 | I, S | DNA (197-MER) | polymer | 197 | 60824.8 | 2 | synthetic construct | ||
6 | J, T | DNA (197-MER) | polymer | 197 | 60815.8 | 2 | synthetic construct | ||
7 | Z | Histone H1.0-B | polymer | 196 | 21129.5 | 1 | UniProt (P22844) Pfam (PF00538) In PDB | Xenopus laevis (African clawed frog) | H1-SA,H1D,Histone H1(0)-2,Histone H5A,XlH5A |
Sequence modifications
A, E, K: 1 - 135 (UniProt: P84233)
C, G, M: 1 - 129 (UniProt: P06897)
D, H, N: 1 - 122 (UniProt: P02281)
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Arg 99 | Gly 100 | conflict |
Ser 123 | Ala 124 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 17 |
Total formula weight | 426621.0 | |
All* | Total formula weight | 426621.0 |