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5NDC

Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ACytochrome c oxidase subunit 1polymer56963540.11UniProt (Q5SJ79)
Pfam (PF00115)
In PDB
Thermus thermophilusCytochrome c ba(3) subunit I,Cytochrome c oxidase polypeptide I,Cytochrome cba3 subunit 1
2BCytochrome c oxidase subunit 2polymer16818581.31UniProt (Q5SJ80)
Pfam (PF09125)
Pfam (PF00116)
In PDB
Thermus thermophilusCytochrome c ba(3) subunit II,Cytochrome c oxidase polypeptide II,Cytochrome cba3 subunit 2
3CCytochrome c oxidase polypeptide IIApolymer343769.61UniProt (A0A1J1EEV7)
Pfam (PF08113)
UniProt (by SIFTS) (P82543)
In PDB
Thermus thermophilusCytchrome c oxidase subunit 3
4ACOPPER (II) IONnon-polymer63.51Chemie (CU)
5APROTOPORPHYRIN IX CONTAINING FEnon-polymer616.51Chemie (HEM)
6AHEME-ASnon-polymer921.01Chemie (HAS)
7A, B, C(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoatenon-polymer356.515Chemie (OLC)
8BDINUCLEAR COPPER IONnon-polymer127.11Chemie (CUA)
9waterwater18.092Chemie (HOH)
Sequence modifications
A: 2 - 562 (UniProt: Q5SJ79)
PDBExternal DatabaseDetails
Met -6-initiating methionine
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
His -1-expression tag
His 0-expression tag
His 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight85891.0
Non-Polymers*Number of molecules19
Total formula weight7076.2
All*Total formula weight92967.2
*Water molecules are not included.

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PDB entries from 2024-09-18

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