5N0A
Crystal structure of A259C covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 A11
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Envelope Glycoprotein E | polymer | 430 | 47477.2 | 2 | UniProt (Q68Y26) Pfam (PF00869) Pfam (PF02832) UniProt (by SIFTS) (A0A0B4SHY9) In PDB | Dengue virus 2 | |
| 2 | H, I | BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 HEAVY CHAIN | polymer | 283 | 30355.5 | 2 | Homo sapiens (Human) | ||
| 3 | L, M | BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 | polymer | 218 | 23107.7 | 2 | Homo sapiens (Human) | ||
| 4 | C, D | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 2 | In PDB GlyTouCan (G82348BZ) |
Sequence modifications
A, B: 1 - 395 (UniProt: Q68Y26)
| PDB | External Database | Details |
|---|---|---|
| Lys 118 | Met 398 | conflict |
| Cys 259 | Ala 539 | engineered mutation |
| Leu 396 | - | expression tag |
| Val 397 | - | expression tag |
| Pro 398 | - | expression tag |
| Arg 399 | - | expression tag |
| Gly 400 | - | expression tag |
| Ser 401 | - | expression tag |
| Ser 402 | - | expression tag |
| Ala 403 | - | expression tag |
| Trp 404 | - | expression tag |
| Ser 405 | - | expression tag |
| His 406 | - | expression tag |
| Pro 407 | - | expression tag |
| Gln 408 | - | expression tag |
| Phe 409 | - | expression tag |
| Glu 410 | - | expression tag |
| Lys 411 | - | expression tag |
| Gly 412 | - | expression tag |
| Gly 413 | - | expression tag |
| Ser 414 | - | expression tag |
| Gly 415 | - | expression tag |
| Gly 416 | - | expression tag |
| Gly 417 | - | expression tag |
| Ser 418 | - | expression tag |
| Gly 419 | - | expression tag |
| Gly 420 | - | expression tag |
| Ser 421 | - | expression tag |
| Ala 422 | - | expression tag |
| Trp 423 | - | expression tag |
| Ser 424 | - | expression tag |
| His 425 | - | expression tag |
| Pro 426 | - | expression tag |
| Gln 427 | - | expression tag |
| Phe 428 | - | expression tag |
| Glu 429 | - | expression tag |
| Lys 430 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 201880.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 2113.9 | |
| All* | Total formula weight | 203994.6 |
