5N0A
Crystal structure of A259C covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 A11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2015-03-12 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.984 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 58.774, 182.301, 208.725 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 3.900 |
R-factor | 0.2861 |
Rwork | 0.285 |
R-free | 0.30000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4UTA;4UT7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.130 |
Data reduction software | XDS |
Data scaling software | Aimless |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 4.100 |
High resolution limit [Å] | 3.900 | 3.900 |
Rmerge | 0.316 | 0.800 |
Rmeas | 0.410 | |
Rpim | 0.257 | 0.670 |
Number of reflections | 19112 | 4789 |
<I/σ(I)> | 3.1 | 1.4 |
Completeness [%] | 96.9 | 97.5 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 100mM Hepes pH 7.5, 19% PEG 6K, 1.5% (v/v) 2-methyl-2,4-pentanediol |