5MR3
Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G (A, C, E, G) | Egg-lysin | polymer | 136 | 16295.2 | 4 | UniProt (P04552) Pfam (PF01303) | Haliotis rufescens (California red abalone) | Sperm-lysin |
2 | B, D, F, H (B, D, F, H) | Vitelline envelope sperm lysin receptor | polymer | 134 | 15089.3 | 4 | UniProt (Q8WR62) Pfam (PF11386) | Haliotis rufescens (California red abalone) | |
3 | AA, I, J, K, M... (H, A, B, C, D...) | GLYCEROL | non-polymer | 92.1 | 12 | Chemie (GOL) | |||
4 | L, V (B, F) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
5 | BA, N, S, W (H, B, D, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | Haliotis rufescens | ||
6 | X, Y (G) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 2 | Chemie (PGE) | |||
7 | CA, DA, EA, FA, GA... (A, B, C, D, E...) | water | water | 18.0 | 559 | Chemie (HOH) |
Sequence modifications
B, D, F, H: 176 - 298 (UniProt: Q8WR62)
PDB | External Database | Details |
---|---|---|
Glu 173 | - | expression tag |
Thr 174 | - | expression tag |
Gly 175 | - | expression tag |
Ala 293 | Ser 293 | engineered mutation |
Ala 296 | Ser 296 | engineered mutation |
Ala 297 | Ser 297 | engineered mutation |
Leu 299 | - | expression tag |
Glu 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
His 303 | - | expression tag |
His 304 | - | expression tag |
His 305 | - | expression tag |
His 306 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 125538.2 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 2361.2 | |
All* | Total formula weight | 127899.4 |