5MR3
Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-02 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.07227 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.870, 87.860, 92.550 |
Unit cell angles | 90.00, 100.93, 90.00 |
Refinement procedure
Resolution | 45.322 - 1.800 |
R-factor | 0.2021 |
Rwork | 0.201 |
R-free | 0.22700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ID 5II8 5ii9 D_1200000737 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.793 |
Data reduction software | XDS (May 1, 2016 BUILT=20160617) |
Data scaling software | XDS (May 1, 2016 BUILT=20160617) |
Phasing software | PHASER (2.7.12) |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.322 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.054 | 1.494 |
Number of reflections | 109995 | |
<I/σ(I)> | 11.53 | 0.97 |
Completeness [%] | 99.5 | 99.6 |
Redundancy | 3.4 | 3.4 |
CC(1/2) | 0.998 | 0.307 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 5% (w/v) PEG 8000, 20% (v/v) PEG 300, 10% (v/v) Glycerol, 0.1 M Tris pH 8.5 |