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5M4L

Crystal Structure of Wild-Type Human Prolidase with Mg ions and LeuPro ligand

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Xaa-Pro dipeptidasepolymer48453799.12UniProt (P12955)
Pfam (PF05195)
Pfam (PF00557)
Homo sapiens (Human)X-Pro dipeptidase,Imidodipeptidase,Peptidase D,Proline dipeptidase,Prolidase
2C, D, L, M
(A, B)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
3E, N
(A, B)
HYDROXIDE IONnon-polymer17.02Chemie (OH)
4F, O
(A, B)
LEUCINEnon-polymer131.22Chemie (LEU)Homo sapiens
5G, P
(A, B)
PROLINEnon-polymer115.12Chemie (PRO)Homo sapiens
6H, I, J, K, Q...
(A, B)
GLYCEROLnon-polymer92.17Chemie (GOL)
7T
(B)
SODIUM IONnon-polymer23.01Chemie (NA)
8U, V
(A, B)
waterwater18.01151Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight107598.2
Non-Polymers*Number of molecules18
Total formula weight1291.5
All*Total formula weight108889.7
*Water molecules are not included.

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PDB entries from 2025-06-18

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