Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5M1J

Nonstop ribosomal complex bound with Dom34 and Hbs1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A1)
Protein DOM34polymer38143574.31UniProt (P33309)
Pfam (PF03463)
Pfam (PF03464)
Pfam (PF03465)
Saccharomyces cerevisiae (Baker's yeast)
2B
(A2)
40S ribosomal protein S0-Apolymer20722940.21UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A
3C
(a2)
40S ribosomal protein S26-Bpolymer9811151.11UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (Baker's yeast)
4D
(B2)
40S ribosomal protein S1-Apolymer21424312.21UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (Baker's yeast)RP10A
5E
(b2)
40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (Baker's yeast)RP61,YS20
6F
(C2)
40S ribosomal protein S2polymer21723213.01UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,YS5
7G
(c2)
40S ribosomal protein S28-Bpolymer637116.31UniProt (P0C0X0)
Pfam (PF01200)
Saccharomyces cerevisiae (Baker's yeast)S33,YS27
8H
(D2)
40S ribosomal protein S3polymer22324702.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (Baker's yeast)RP13,YS3
9I
(d2)
40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (Baker's yeast)S36,YS29
10J
(E2)
40S ribosomal protein S4-Apolymer26029338.11UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (Baker's yeast)RP5,S7,YS6
11K
(e2)
40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (Baker's yeast)
12L
(F2)
40S ribosomal protein S5polymer20622908.31UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae (Baker's yeast)RP14,S2,YS8
13M
(G2)
40S ribosomal protein S6-Apolymer22625895.11UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (Baker's yeast)RP9,S10,YS4
14N
(g2)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31834710.01UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1
15O
(H2)
40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (Baker's yeast)RP30,RP40
16P
(I2)
40S ribosomal protein S8-Apolymer19922406.61UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (Baker's yeast)RP19,S14,YS9
17Q
(J2)
40S ribosomal protein S9-Apolymer18521210.71UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (Baker's yeast)RP21,S13,YP28,YS11
18R
(K2)
40S ribosomal protein S10-Apolymer9611571.11UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (Baker's yeast)
19S
(L2)
40S ribosomal protein S11-Apolymer15517654.71UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (Baker's yeast)RP41,S18,YS12
20T
(M2)
40S ribosomal protein S12polymer12413327.31UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)
21U
(N2)
40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (Baker's yeast)S27a,YS15
22V
(O2)
40S ribosomal protein S14-Apolymer12713446.41UniProt (P06367)
Pfam (PF00411)
Saccharomyces cerevisiae (Baker's yeast)RP59A
23W
(P2)
40S ribosomal protein S15polymer12414155.71UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,YS21
24X
(Q2)
40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (Baker's yeast)RP61R
25Y
(R2)
40S ribosomal protein S17-Bpolymer12514268.51UniProt (P14127)
Pfam (PF00833)
Saccharomyces cerevisiae (Baker's yeast)RP51B
26Z
(S2)
40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (Baker's yeast)
27AA
(T2)
40S ribosomal protein S19-Apolymer14315810.91UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,YP45,YS16A
28BA
(U2)
40S ribosomal protein S20polymer10712190.21UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (Baker's yeast)
29CA
(V2)
40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (Baker's yeast)S26,YS25
30DA
(W2)
40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (Baker's yeast)RP50,S24,YP58,YS22
31EA
(X2)
40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (Baker's yeast)RP37,S28,YS14
32FA
(Y2)
40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (Baker's yeast)RP50
33GA
(Z2)
40S ribosomal protein S25-Apolymer708001.41UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (Baker's yeast)RP45,S31,YS23
34HA
(22)
18S ribosomal RNApolymer1798579126.61GenBank (874346701)Saccharomyces cerevisiae (Baker's yeast)
35IA
(f2)
Ubiquitin-40S ribosomal protein S31polymer718101.71UniProt (P05759)
Pfam (PF01599)
Saccharomyces cerevisiae (Baker's yeast)
36JA
(14)
25S ribosomal RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae (Baker's yeast)
37KA
(34)
5S ribosomal RNApolymer12138951.11GenBank (1039024045)Saccharomyces cerevisiae (Baker's yeast)
38LA
(44)
5.8S ribosomal RNApolymer15850682.91GenBank (1102645687)Saccharomyces cerevisiae (Baker's yeast)
39MA
(a5)
60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,RP44,RP62,YL24
40NA
(A5)
60S ribosomal protein L2-Apolymer25227217.31UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (Baker's yeast)L5,RP8,YL6
41OA
(b5)
60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (Baker's yeast)YL43
42PA
(B5)
60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (Baker's yeast)Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
43QA
(c5)
60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L32,RP73,YL38
44RA
(C5)
60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (Baker's yeast)L2,RP2,YL2
45SA
(D5)
60S ribosomal protein L5polymer29633633.61UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Ribosomal 5S RNA-binding protein,YL3
46TA
(d5)
60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (Baker's yeast)L34,YL28
47UA
(e5)
60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (Baker's yeast)
48VA
(f5)
60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (Baker's yeast)L37,RP47,YL37
49WA
(F5)
60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (Baker's yeast)L6,RP11,YL8
50XA
(g5)
60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (Baker's yeast)
51YA
(G5)
60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5
52ZA
(h5)
60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (Baker's yeast)
53AB
(H5)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (Baker's yeast)L8,RP24,YL11
54BB
(i5)
60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (Baker's yeast)L39,YL39
55CB
(I5)
60S ribosomal protein L10polymer22025279.31UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (Baker's yeast)L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
56DB
(J5)
60S ribosomal protein L11-Apolymer16919266.11UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (Baker's yeast)L16,RP39,YL22
57EB
(j5)
60S ribosomal protein L37-Apolymer879746.21UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (Baker's yeast)L43,YL35,YP55
58FB
(k5)
60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (Baker's yeast)
59GB
(l5)
60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (Baker's yeast)L46,YL40
60HB
(L5)
60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (Baker's yeast)
61IB
(m5)
Ubiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
Saccharomyces cerevisiae (Baker's yeast)
62JB
(M5)
60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (Baker's yeast)
63KB
(N5)
60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (Baker's yeast)L13,RP15R,YL10,YP18
64LB
(o5)
60S ribosomal protein L42-Bpolymer10512115.51UniProt (P0CX28)
Pfam (PF00935)
Saccharomyces cerevisiae (Baker's yeast)L41,Maintenance of killer protein 18,YL27,YP44
65MB
(p5)
60S ribosomal protein L43-Bpolymer919981.81UniProt (P0CX26)
Pfam (PF01780)
Saccharomyces cerevisiae (Baker's yeast)L37a,YL35
66NB
(P5)
60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (Baker's yeast)L20A,YL17
67OB
(Q5)
60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (Baker's yeast)RP28
68PB
(S5)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (Baker's yeast)L18a
69QB
(U5)
60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (Baker's yeast)L1c,RP4,YL31
70RB
(V5)
60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (Baker's yeast)L17a,YL32
71SB
(Z5)
60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (Baker's yeast)
72TB
(K5)
60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,RP22,YL15
73UB
(n5)
60S ribosomal protein L41-Bpolymer253354.21UniProt (P0CX87)
Pfam (PF05162)
Saccharomyces cerevisiae (Baker's yeast)L47,YL41
74VB
(R5)
60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (Baker's yeast)L23,RP15L,RP33,YL14
75WB
(X5)
60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (Baker's yeast)RP16L,YL25,YP42'
76XB
(Y5)
60S ribosomal protein L26-Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (Baker's yeast)L33,YL33
77YB
(T5)
60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (Baker's yeast)
78ZB
(E5)
60S ribosomal protein L6-Apolymer17519869.41UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (Baker's yeast)L17,RP18,YL16
79AC
(W5)
60S ribosomal protein L24-Apolymer9811369.41UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (Baker's yeast)L30,RP29,YL21
80BC
(A6)
Protein HBS1polymer61168812.41UniProt (P32769)
Pfam (PF22594)
Pfam (PF08938)
Pfam (PF00009)
Saccharomyces cerevisiae (Baker's yeast)
81CC
(X7)
nonstop mRNApolymer206495.01synthetic construct
82DC
(A3)
yeast Phe-tRNA-Phepolymer7624890.11Saccharomyces cerevisiae (Baker's yeast)
83BK, EC, EPA, GC, JC...
(f2, a2, m5, b2, d2...)
ZINC IONnon-polymer65.48Chemie (ZN)
84AAA, ABA, ACA, AD, ADA...
(14, T2, 22, 44, a5...)
MAGNESIUM IONnon-polymer24.31058Chemie (MG)
85WQA
(A6)
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
86ZQA
(A3)
N-acetyl-L-phenylalaninenon-polymer207.21Chemie (5CR)
87GRA, HRA
(A1, A6)
waterwater18.013Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3168300.7
Non-Polymers*Number of molecules1068
Total formula weight26967.4
All*Total formula weight3195268.1
*Water molecules are not included.

246905

PDB entries from 2025-12-31

PDB statisticsPDBj update infoContact PDBjnumon