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5LD1

Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Polyphosphate:AMP phosphotransferasepolymer28733778.34UniProt (A0A0S7ASE9)Meiothermus ruber
2E, F, I, J, P...
(A, B, C, D)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.28Chemie (ATP)
3G, K, M, N, R...
(A, B, C, D)
MAGNESIUM IONnon-polymer24.37Chemie (MG)
4H, O, U, Y
(A, B, C, D)
SULFATE IONnon-polymer96.14Chemie (SO4)
5L, S
(B, C)
GLYCEROLnon-polymer92.12Chemie (GOL)
6AA, BA, CA, Z
(B, C, D, A)
waterwater18.0874Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 267 (UniProt: A0A0S7ASE9)
PDBExternal DatabaseDetails
Met -19-initiating methionine
Gly -18-expression tag
Ser -17-expression tag
Ser -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Gly -7-expression tag
Leu -6-expression tag
Val -5-expression tag
Pro -4-expression tag
Arg -3-expression tag
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight135113.4
Non-Polymers*Number of molecules21
Total formula weight4796.0
All*Total formula weight139909.4
*Water molecules are not included.

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PDB entries from 2025-12-17

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