Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LD1

Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0006797biological_processpolyphosphate metabolic process
A0008976molecular_functionpolyphosphate kinase activity
A0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
B0006797biological_processpolyphosphate metabolic process
B0008976molecular_functionpolyphosphate kinase activity
B0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
C0006797biological_processpolyphosphate metabolic process
C0008976molecular_functionpolyphosphate kinase activity
C0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
D0006797biological_processpolyphosphate metabolic process
D0008976molecular_functionpolyphosphate kinase activity
D0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue ATP A 1001
ChainResidue
AASP66
AASP127
AVAL130
AARG193
AATP1002
AMG1003
AHOH1131
AHOH1142
AHOH1147
AHOH1149
AHOH1197
ALYS70
AHOH1199
DHOH1105
APHE91
AGLY92
AVAL93
APRO94
AARG106
AARG122
AGLU126

site_idAC2
Number of Residues26
Detailsbinding site for residue ATP A 1002
ChainResidue
AASP66
AALA67
AGLY68
AGLY69
ALYS70
AASP71
AASN121
AARG122
AARG182
ATRP190
ALYS191
AATP1001
AMG1003
AHOH1112
AHOH1114
AHOH1179
AHOH1219
AHOH1224
AHOH1251
DGLN47
DGLU48
DTYR51
DASN82
DSER84
DGLY85
DHOH1137

site_idAC3
Number of Residues3
Detailsbinding site for residue MG A 1003
ChainResidue
AASP66
AATP1001
AATP1002

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 1004
ChainResidue
ALYS29
ALYS231
AASN232
ATRP233
AHOH1253

site_idAC5
Number of Residues25
Detailsbinding site for residue ATP B 1001
ChainResidue
BASP66
BLYS70
BPHE91
BGLY92
BVAL93
BPRO94
BARG106
BARG122
BGLU126
BASP127
BVAL130
BATP1002
BMG1003
BGOL1004
BMG1006
BHOH1123
BHOH1141
BHOH1177
BHOH1195
BHOH1209
BHOH1211
BHOH1223
BHOH1226
BHOH1256
CHOH1134

site_idAC6
Number of Residues27
Detailsbinding site for residue ATP B 1002
ChainResidue
BHOH1254
CGLN47
CGLU48
CTYR51
CASN82
CSER84
CGLY85
CHOH1133
BASP66
BALA67
BGLY68
BGLY69
BLYS70
BASP71
BASN121
BARG122
BARG182
BTRP190
BLYS191
BATP1001
BMG1003
BHOH1103
BHOH1125
BHOH1143
BHOH1160
BHOH1188
BHOH1233

site_idAC7
Number of Residues3
Detailsbinding site for residue MG B 1003
ChainResidue
BASP66
BATP1001
BATP1002

site_idAC8
Number of Residues6
Detailsbinding site for residue GOL B 1004
ChainResidue
BMET65
BASP66
BGLU126
BTYR210
BATP1001
BHOH1111

site_idAC9
Number of Residues5
Detailsbinding site for residue MG B 1005
ChainResidue
BTHR95
BHOH1105
BHOH1276
DHOH1166
DHOH1243

site_idAD1
Number of Residues6
Detailsbinding site for residue MG B 1006
ChainResidue
BPRO94
BASP127
BATP1001
BHOH1195
BHOH1258
BHOH1312

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 B 1007
ChainResidue
BLYS29
BLYS231
BASN232
BTRP233

site_idAD3
Number of Residues24
Detailsbinding site for residue ATP C 1001
ChainResidue
BHOH1120
CASP66
CLYS70
CPHE91
CGLY92
CVAL93
CPRO94
CARG106
CARG122
CGLU126
CASP127
CVAL130
CARG193
CATP1002
CMG1003
CGOL1004
CHOH1164
CHOH1166
CHOH1174
CHOH1179
CHOH1183
CHOH1187
CHOH1188
CHOH1230

site_idAD4
Number of Residues26
Detailsbinding site for residue ATP C 1002
ChainResidue
BGLN47
BGLU48
BTYR51
BASN82
BSER84
BGLY85
BHOH1139
CASP66
CALA67
CGLY68
CGLY69
CLYS70
CASP71
CASN121
CARG122
CARG182
CTRP190
CLYS191
CATP1001
CMG1003
CHOH1119
CHOH1125
CHOH1153
CHOH1163
CHOH1196
CHOH1205

site_idAD5
Number of Residues3
Detailsbinding site for residue MG C 1003
ChainResidue
CASP66
CATP1001
CATP1002

site_idAD6
Number of Residues6
Detailsbinding site for residue GOL C 1004
ChainResidue
CALA64
CMET65
CASP66
CGLU126
CTYR210
CATP1001

site_idAD7
Number of Residues8
Detailsbinding site for residue MG C 1005
ChainResidue
CARG87
CGLN109
CGLN110
CVAL111
CHOH1121
CHOH1266
DARG101
DTRP105

site_idAD8
Number of Residues4
Detailsbinding site for residue SO4 C 1006
ChainResidue
CLYS29
CLYS231
CASN232
CTRP233

site_idAD9
Number of Residues20
Detailsbinding site for residue ATP D 1001
ChainResidue
DASP66
DLYS70
DPHE91
DGLY92
DVAL93
DPRO94
DARG106
DARG122
DGLU126
DASP127
DVAL130
DARG193
DATP1002
DMG1003
DHOH1126
DHOH1145
DHOH1160
DHOH1164
DHOH1173
DHOH1222

site_idAE1
Number of Residues25
Detailsbinding site for residue ATP D 1002
ChainResidue
AGLN47
AGLU48
ATYR51
AASN82
ASER84
AGLY85
DASP66
DALA67
DGLY68
DGLY69
DLYS70
DASP71
DASN121
DARG122
DARG182
DTRP190
DLYS191
DATP1001
DMG1003
DHOH1110
DHOH1138
DHOH1174
DHOH1196
DHOH1197
DHOH1218

site_idAE2
Number of Residues3
Detailsbinding site for residue MG D 1003
ChainResidue
DASP66
DATP1001
DATP1002

site_idAE3
Number of Residues3
Detailsbinding site for residue SO4 D 1004
ChainResidue
DLYS29
DASN232
DTRP233

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon