5LD1
Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006797 | biological_process | polyphosphate metabolic process |
| A | 0008976 | molecular_function | polyphosphate kinase activity |
| A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| B | 0006797 | biological_process | polyphosphate metabolic process |
| B | 0008976 | molecular_function | polyphosphate kinase activity |
| B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| C | 0006797 | biological_process | polyphosphate metabolic process |
| C | 0008976 | molecular_function | polyphosphate kinase activity |
| C | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| D | 0006797 | biological_process | polyphosphate metabolic process |
| D | 0008976 | molecular_function | polyphosphate kinase activity |
| D | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | binding site for residue ATP A 1001 |
| Chain | Residue |
| A | ASP66 |
| A | ASP127 |
| A | VAL130 |
| A | ARG193 |
| A | ATP1002 |
| A | MG1003 |
| A | HOH1131 |
| A | HOH1142 |
| A | HOH1147 |
| A | HOH1149 |
| A | HOH1197 |
| A | LYS70 |
| A | HOH1199 |
| D | HOH1105 |
| A | PHE91 |
| A | GLY92 |
| A | VAL93 |
| A | PRO94 |
| A | ARG106 |
| A | ARG122 |
| A | GLU126 |
| site_id | AC2 |
| Number of Residues | 26 |
| Details | binding site for residue ATP A 1002 |
| Chain | Residue |
| A | ASP66 |
| A | ALA67 |
| A | GLY68 |
| A | GLY69 |
| A | LYS70 |
| A | ASP71 |
| A | ASN121 |
| A | ARG122 |
| A | ARG182 |
| A | TRP190 |
| A | LYS191 |
| A | ATP1001 |
| A | MG1003 |
| A | HOH1112 |
| A | HOH1114 |
| A | HOH1179 |
| A | HOH1219 |
| A | HOH1224 |
| A | HOH1251 |
| D | GLN47 |
| D | GLU48 |
| D | TYR51 |
| D | ASN82 |
| D | SER84 |
| D | GLY85 |
| D | HOH1137 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 1003 |
| Chain | Residue |
| A | ASP66 |
| A | ATP1001 |
| A | ATP1002 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1004 |
| Chain | Residue |
| A | LYS29 |
| A | LYS231 |
| A | ASN232 |
| A | TRP233 |
| A | HOH1253 |
| site_id | AC5 |
| Number of Residues | 25 |
| Details | binding site for residue ATP B 1001 |
| Chain | Residue |
| B | ASP66 |
| B | LYS70 |
| B | PHE91 |
| B | GLY92 |
| B | VAL93 |
| B | PRO94 |
| B | ARG106 |
| B | ARG122 |
| B | GLU126 |
| B | ASP127 |
| B | VAL130 |
| B | ATP1002 |
| B | MG1003 |
| B | GOL1004 |
| B | MG1006 |
| B | HOH1123 |
| B | HOH1141 |
| B | HOH1177 |
| B | HOH1195 |
| B | HOH1209 |
| B | HOH1211 |
| B | HOH1223 |
| B | HOH1226 |
| B | HOH1256 |
| C | HOH1134 |
| site_id | AC6 |
| Number of Residues | 27 |
| Details | binding site for residue ATP B 1002 |
| Chain | Residue |
| B | HOH1254 |
| C | GLN47 |
| C | GLU48 |
| C | TYR51 |
| C | ASN82 |
| C | SER84 |
| C | GLY85 |
| C | HOH1133 |
| B | ASP66 |
| B | ALA67 |
| B | GLY68 |
| B | GLY69 |
| B | LYS70 |
| B | ASP71 |
| B | ASN121 |
| B | ARG122 |
| B | ARG182 |
| B | TRP190 |
| B | LYS191 |
| B | ATP1001 |
| B | MG1003 |
| B | HOH1103 |
| B | HOH1125 |
| B | HOH1143 |
| B | HOH1160 |
| B | HOH1188 |
| B | HOH1233 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 1003 |
| Chain | Residue |
| B | ASP66 |
| B | ATP1001 |
| B | ATP1002 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 1004 |
| Chain | Residue |
| B | MET65 |
| B | ASP66 |
| B | GLU126 |
| B | TYR210 |
| B | ATP1001 |
| B | HOH1111 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 1005 |
| Chain | Residue |
| B | THR95 |
| B | HOH1105 |
| B | HOH1276 |
| D | HOH1166 |
| D | HOH1243 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 1006 |
| Chain | Residue |
| B | PRO94 |
| B | ASP127 |
| B | ATP1001 |
| B | HOH1195 |
| B | HOH1258 |
| B | HOH1312 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 1007 |
| Chain | Residue |
| B | LYS29 |
| B | LYS231 |
| B | ASN232 |
| B | TRP233 |
| site_id | AD3 |
| Number of Residues | 24 |
| Details | binding site for residue ATP C 1001 |
| Chain | Residue |
| B | HOH1120 |
| C | ASP66 |
| C | LYS70 |
| C | PHE91 |
| C | GLY92 |
| C | VAL93 |
| C | PRO94 |
| C | ARG106 |
| C | ARG122 |
| C | GLU126 |
| C | ASP127 |
| C | VAL130 |
| C | ARG193 |
| C | ATP1002 |
| C | MG1003 |
| C | GOL1004 |
| C | HOH1164 |
| C | HOH1166 |
| C | HOH1174 |
| C | HOH1179 |
| C | HOH1183 |
| C | HOH1187 |
| C | HOH1188 |
| C | HOH1230 |
| site_id | AD4 |
| Number of Residues | 26 |
| Details | binding site for residue ATP C 1002 |
| Chain | Residue |
| B | GLN47 |
| B | GLU48 |
| B | TYR51 |
| B | ASN82 |
| B | SER84 |
| B | GLY85 |
| B | HOH1139 |
| C | ASP66 |
| C | ALA67 |
| C | GLY68 |
| C | GLY69 |
| C | LYS70 |
| C | ASP71 |
| C | ASN121 |
| C | ARG122 |
| C | ARG182 |
| C | TRP190 |
| C | LYS191 |
| C | ATP1001 |
| C | MG1003 |
| C | HOH1119 |
| C | HOH1125 |
| C | HOH1153 |
| C | HOH1163 |
| C | HOH1196 |
| C | HOH1205 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue MG C 1003 |
| Chain | Residue |
| C | ASP66 |
| C | ATP1001 |
| C | ATP1002 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 1004 |
| Chain | Residue |
| C | ALA64 |
| C | MET65 |
| C | ASP66 |
| C | GLU126 |
| C | TYR210 |
| C | ATP1001 |
| site_id | AD7 |
| Number of Residues | 8 |
| Details | binding site for residue MG C 1005 |
| Chain | Residue |
| C | ARG87 |
| C | GLN109 |
| C | GLN110 |
| C | VAL111 |
| C | HOH1121 |
| C | HOH1266 |
| D | ARG101 |
| D | TRP105 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 C 1006 |
| Chain | Residue |
| C | LYS29 |
| C | LYS231 |
| C | ASN232 |
| C | TRP233 |
| site_id | AD9 |
| Number of Residues | 20 |
| Details | binding site for residue ATP D 1001 |
| Chain | Residue |
| D | ASP66 |
| D | LYS70 |
| D | PHE91 |
| D | GLY92 |
| D | VAL93 |
| D | PRO94 |
| D | ARG106 |
| D | ARG122 |
| D | GLU126 |
| D | ASP127 |
| D | VAL130 |
| D | ARG193 |
| D | ATP1002 |
| D | MG1003 |
| D | HOH1126 |
| D | HOH1145 |
| D | HOH1160 |
| D | HOH1164 |
| D | HOH1173 |
| D | HOH1222 |
| site_id | AE1 |
| Number of Residues | 25 |
| Details | binding site for residue ATP D 1002 |
| Chain | Residue |
| A | GLN47 |
| A | GLU48 |
| A | TYR51 |
| A | ASN82 |
| A | SER84 |
| A | GLY85 |
| D | ASP66 |
| D | ALA67 |
| D | GLY68 |
| D | GLY69 |
| D | LYS70 |
| D | ASP71 |
| D | ASN121 |
| D | ARG122 |
| D | ARG182 |
| D | TRP190 |
| D | LYS191 |
| D | ATP1001 |
| D | MG1003 |
| D | HOH1110 |
| D | HOH1138 |
| D | HOH1174 |
| D | HOH1196 |
| D | HOH1197 |
| D | HOH1218 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue MG D 1003 |
| Chain | Residue |
| D | ASP66 |
| D | ATP1001 |
| D | ATP1002 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 1004 |
| Chain | Residue |
| D | LYS29 |
| D | ASN232 |
| D | TRP233 |
