5LD1
Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006797 | biological_process | polyphosphate metabolic process |
A | 0008976 | molecular_function | polyphosphate kinase activity |
A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
B | 0006797 | biological_process | polyphosphate metabolic process |
B | 0008976 | molecular_function | polyphosphate kinase activity |
B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
C | 0006797 | biological_process | polyphosphate metabolic process |
C | 0008976 | molecular_function | polyphosphate kinase activity |
C | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
D | 0006797 | biological_process | polyphosphate metabolic process |
D | 0008976 | molecular_function | polyphosphate kinase activity |
D | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | binding site for residue ATP A 1001 |
Chain | Residue |
A | ASP66 |
A | ASP127 |
A | VAL130 |
A | ARG193 |
A | ATP1002 |
A | MG1003 |
A | HOH1131 |
A | HOH1142 |
A | HOH1147 |
A | HOH1149 |
A | HOH1197 |
A | LYS70 |
A | HOH1199 |
D | HOH1105 |
A | PHE91 |
A | GLY92 |
A | VAL93 |
A | PRO94 |
A | ARG106 |
A | ARG122 |
A | GLU126 |
site_id | AC2 |
Number of Residues | 26 |
Details | binding site for residue ATP A 1002 |
Chain | Residue |
A | ASP66 |
A | ALA67 |
A | GLY68 |
A | GLY69 |
A | LYS70 |
A | ASP71 |
A | ASN121 |
A | ARG122 |
A | ARG182 |
A | TRP190 |
A | LYS191 |
A | ATP1001 |
A | MG1003 |
A | HOH1112 |
A | HOH1114 |
A | HOH1179 |
A | HOH1219 |
A | HOH1224 |
A | HOH1251 |
D | GLN47 |
D | GLU48 |
D | TYR51 |
D | ASN82 |
D | SER84 |
D | GLY85 |
D | HOH1137 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue MG A 1003 |
Chain | Residue |
A | ASP66 |
A | ATP1001 |
A | ATP1002 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 1004 |
Chain | Residue |
A | LYS29 |
A | LYS231 |
A | ASN232 |
A | TRP233 |
A | HOH1253 |
site_id | AC5 |
Number of Residues | 25 |
Details | binding site for residue ATP B 1001 |
Chain | Residue |
B | ASP66 |
B | LYS70 |
B | PHE91 |
B | GLY92 |
B | VAL93 |
B | PRO94 |
B | ARG106 |
B | ARG122 |
B | GLU126 |
B | ASP127 |
B | VAL130 |
B | ATP1002 |
B | MG1003 |
B | GOL1004 |
B | MG1006 |
B | HOH1123 |
B | HOH1141 |
B | HOH1177 |
B | HOH1195 |
B | HOH1209 |
B | HOH1211 |
B | HOH1223 |
B | HOH1226 |
B | HOH1256 |
C | HOH1134 |
site_id | AC6 |
Number of Residues | 27 |
Details | binding site for residue ATP B 1002 |
Chain | Residue |
B | HOH1254 |
C | GLN47 |
C | GLU48 |
C | TYR51 |
C | ASN82 |
C | SER84 |
C | GLY85 |
C | HOH1133 |
B | ASP66 |
B | ALA67 |
B | GLY68 |
B | GLY69 |
B | LYS70 |
B | ASP71 |
B | ASN121 |
B | ARG122 |
B | ARG182 |
B | TRP190 |
B | LYS191 |
B | ATP1001 |
B | MG1003 |
B | HOH1103 |
B | HOH1125 |
B | HOH1143 |
B | HOH1160 |
B | HOH1188 |
B | HOH1233 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue MG B 1003 |
Chain | Residue |
B | ASP66 |
B | ATP1001 |
B | ATP1002 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue GOL B 1004 |
Chain | Residue |
B | MET65 |
B | ASP66 |
B | GLU126 |
B | TYR210 |
B | ATP1001 |
B | HOH1111 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue MG B 1005 |
Chain | Residue |
B | THR95 |
B | HOH1105 |
B | HOH1276 |
D | HOH1166 |
D | HOH1243 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue MG B 1006 |
Chain | Residue |
B | PRO94 |
B | ASP127 |
B | ATP1001 |
B | HOH1195 |
B | HOH1258 |
B | HOH1312 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 1007 |
Chain | Residue |
B | LYS29 |
B | LYS231 |
B | ASN232 |
B | TRP233 |
site_id | AD3 |
Number of Residues | 24 |
Details | binding site for residue ATP C 1001 |
Chain | Residue |
B | HOH1120 |
C | ASP66 |
C | LYS70 |
C | PHE91 |
C | GLY92 |
C | VAL93 |
C | PRO94 |
C | ARG106 |
C | ARG122 |
C | GLU126 |
C | ASP127 |
C | VAL130 |
C | ARG193 |
C | ATP1002 |
C | MG1003 |
C | GOL1004 |
C | HOH1164 |
C | HOH1166 |
C | HOH1174 |
C | HOH1179 |
C | HOH1183 |
C | HOH1187 |
C | HOH1188 |
C | HOH1230 |
site_id | AD4 |
Number of Residues | 26 |
Details | binding site for residue ATP C 1002 |
Chain | Residue |
B | GLN47 |
B | GLU48 |
B | TYR51 |
B | ASN82 |
B | SER84 |
B | GLY85 |
B | HOH1139 |
C | ASP66 |
C | ALA67 |
C | GLY68 |
C | GLY69 |
C | LYS70 |
C | ASP71 |
C | ASN121 |
C | ARG122 |
C | ARG182 |
C | TRP190 |
C | LYS191 |
C | ATP1001 |
C | MG1003 |
C | HOH1119 |
C | HOH1125 |
C | HOH1153 |
C | HOH1163 |
C | HOH1196 |
C | HOH1205 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue MG C 1003 |
Chain | Residue |
C | ASP66 |
C | ATP1001 |
C | ATP1002 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue GOL C 1004 |
Chain | Residue |
C | ALA64 |
C | MET65 |
C | ASP66 |
C | GLU126 |
C | TYR210 |
C | ATP1001 |
site_id | AD7 |
Number of Residues | 8 |
Details | binding site for residue MG C 1005 |
Chain | Residue |
C | ARG87 |
C | GLN109 |
C | GLN110 |
C | VAL111 |
C | HOH1121 |
C | HOH1266 |
D | ARG101 |
D | TRP105 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 1006 |
Chain | Residue |
C | LYS29 |
C | LYS231 |
C | ASN232 |
C | TRP233 |
site_id | AD9 |
Number of Residues | 20 |
Details | binding site for residue ATP D 1001 |
Chain | Residue |
D | ASP66 |
D | LYS70 |
D | PHE91 |
D | GLY92 |
D | VAL93 |
D | PRO94 |
D | ARG106 |
D | ARG122 |
D | GLU126 |
D | ASP127 |
D | VAL130 |
D | ARG193 |
D | ATP1002 |
D | MG1003 |
D | HOH1126 |
D | HOH1145 |
D | HOH1160 |
D | HOH1164 |
D | HOH1173 |
D | HOH1222 |
site_id | AE1 |
Number of Residues | 25 |
Details | binding site for residue ATP D 1002 |
Chain | Residue |
A | GLN47 |
A | GLU48 |
A | TYR51 |
A | ASN82 |
A | SER84 |
A | GLY85 |
D | ASP66 |
D | ALA67 |
D | GLY68 |
D | GLY69 |
D | LYS70 |
D | ASP71 |
D | ASN121 |
D | ARG122 |
D | ARG182 |
D | TRP190 |
D | LYS191 |
D | ATP1001 |
D | MG1003 |
D | HOH1110 |
D | HOH1138 |
D | HOH1174 |
D | HOH1196 |
D | HOH1197 |
D | HOH1218 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue MG D 1003 |
Chain | Residue |
D | ASP66 |
D | ATP1001 |
D | ATP1002 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 1004 |
Chain | Residue |
D | LYS29 |
D | ASN232 |
D | TRP233 |