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5KVU

Crystal structure of isocitrate dehydrogenase-2 in complex with NADP(+) from Mycobacterium tuberculosis

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Isocitrate dehydrogenasepolymer74582650.94UniProt (O53611)
Pfam (PF03971)
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)Probable isocitrate dehydrogenase [NADP] Icd2 (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP)
2E, H, L, Q
(A, B, C, D)
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer743.44Chemie (NAP)
3F
(A)
D-MALATEnon-polymer134.11Chemie (MLT)
4G, J, K, O, P...
(A, B, C, D)
1,2-ETHANEDIOLnon-polymer62.16Chemie (EDO)
5I, R
(B, D)
MALONIC ACIDnon-polymer104.12Chemie (MLA)
6M
(C)
SUCCINIC ACIDnon-polymer118.11Chemie (SIN)
7N, S
(C, D)
GLYCEROLnon-polymer92.12Chemie (GOL)
8U, V, W, X
(A, B, C, D)
waterwater18.0423Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight330603.6
Non-Polymers*Number of molecules16
Total formula weight3990.5
All*Total formula weight334594.1
*Water molecules are not included.

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PDB entries from 2025-12-03

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