5KVU
Crystal structure of isocitrate dehydrogenase-2 in complex with NADP(+) from Mycobacterium tuberculosis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
| A | 0005576 | cellular_component | extracellular region |
| A | 0005829 | cellular_component | cytosol |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006097 | biological_process | glyoxylate cycle |
| A | 0006099 | biological_process | tricarboxylic acid cycle |
| A | 0006102 | biological_process | isocitrate metabolic process |
| A | 0009274 | cellular_component | peptidoglycan-based cell wall |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0005829 | cellular_component | cytosol |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006097 | biological_process | glyoxylate cycle |
| B | 0006099 | biological_process | tricarboxylic acid cycle |
| B | 0006102 | biological_process | isocitrate metabolic process |
| B | 0009274 | cellular_component | peptidoglycan-based cell wall |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
| C | 0005576 | cellular_component | extracellular region |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0006097 | biological_process | glyoxylate cycle |
| C | 0006099 | biological_process | tricarboxylic acid cycle |
| C | 0006102 | biological_process | isocitrate metabolic process |
| C | 0009274 | cellular_component | peptidoglycan-based cell wall |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0042803 | molecular_function | protein homodimerization activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004450 | molecular_function | isocitrate dehydrogenase (NADP+) activity |
| D | 0005576 | cellular_component | extracellular region |
| D | 0005829 | cellular_component | cytosol |
| D | 0005886 | cellular_component | plasma membrane |
| D | 0006097 | biological_process | glyoxylate cycle |
| D | 0006099 | biological_process | tricarboxylic acid cycle |
| D | 0006102 | biological_process | isocitrate metabolic process |
| D | 0009274 | cellular_component | peptidoglycan-based cell wall |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0042803 | molecular_function | protein homodimerization activity |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 25 |
| Details | binding site for residue NAP A 801 |
| Chain | Residue |
| A | LYS84 |
| A | ALA566 |
| A | GLY586 |
| A | GLY587 |
| A | SER588 |
| A | ALA589 |
| A | PRO590 |
| A | HIS592 |
| A | ARG603 |
| A | TRP604 |
| A | ASP605 |
| A | PRO86 |
| A | ARG652 |
| A | MLT802 |
| A | HOH935 |
| A | HOH943 |
| A | HOH954 |
| A | HOH978 |
| A | ASN87 |
| A | SER89 |
| A | ASN137 |
| A | ARG141 |
| A | ILE350 |
| A | ALA353 |
| A | THR564 |
| site_id | AC2 |
| Number of Residues | 8 |
| Details | binding site for residue MLT A 802 |
| Chain | Residue |
| A | SER89 |
| A | SER134 |
| A | ASN137 |
| A | ARG141 |
| A | TYR422 |
| A | ARG550 |
| A | ASP551 |
| A | NAP801 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 803 |
| Chain | Residue |
| A | ARG526 |
| A | ARG529 |
| A | GLU533 |
| site_id | AC4 |
| Number of Residues | 22 |
| Details | binding site for residue NAP B 801 |
| Chain | Residue |
| B | LYS84 |
| B | PRO86 |
| B | ASN87 |
| B | SER89 |
| B | ASN137 |
| B | ILE350 |
| B | ALA353 |
| B | THR564 |
| B | ALA566 |
| B | GLY586 |
| B | GLY587 |
| B | SER588 |
| B | ALA589 |
| B | PRO590 |
| B | HIS592 |
| B | ARG603 |
| B | TRP604 |
| B | ASP605 |
| B | ARG652 |
| B | MLA802 |
| B | HOH904 |
| B | HOH949 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | binding site for residue MLA B 802 |
| Chain | Residue |
| B | SER89 |
| B | SER134 |
| B | ASN137 |
| B | ARG141 |
| B | LYS257 |
| B | TYR422 |
| B | ARG550 |
| B | ASP551 |
| B | NAP801 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue EDO B 803 |
| Chain | Residue |
| B | ILE502 |
| B | LYS506 |
| B | ILE521 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue EDO B 804 |
| Chain | Residue |
| B | MET522 |
| B | SER523 |
| B | ARG526 |
| B | HOH905 |
| site_id | AC8 |
| Number of Residues | 26 |
| Details | binding site for residue NAP C 801 |
| Chain | Residue |
| C | HOH961 |
| C | LYS84 |
| C | PRO86 |
| C | ASN87 |
| C | ILE88 |
| C | SER89 |
| C | ASN137 |
| C | ARG141 |
| C | ILE350 |
| C | ALA353 |
| C | THR564 |
| C | ALA566 |
| C | GLY586 |
| C | GLY587 |
| C | SER588 |
| C | ALA589 |
| C | PRO590 |
| C | HIS592 |
| C | ARG603 |
| C | TRP604 |
| C | ASP605 |
| C | SIN802 |
| C | HOH918 |
| C | HOH931 |
| C | HOH940 |
| C | HOH958 |
| site_id | AC9 |
| Number of Residues | 8 |
| Details | binding site for residue SIN C 802 |
| Chain | Residue |
| C | SER89 |
| C | ASN137 |
| C | ARG141 |
| C | LYS257 |
| C | TYR422 |
| C | ARG550 |
| C | ASP551 |
| C | NAP801 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 803 |
| Chain | Residue |
| C | VAL334 |
| C | ASP335 |
| C | SER336 |
| C | TYR366 |
| C | LYS591 |
| C | HOH930 |
| site_id | AD2 |
| Number of Residues | 3 |
| Details | binding site for residue EDO C 804 |
| Chain | Residue |
| C | GLY484 |
| C | MET485 |
| C | ASP540 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue EDO C 805 |
| Chain | Residue |
| C | THR191 |
| C | GLU500 |
| C | LYS503 |
| C | LYS504 |
| C | THR507 |
| site_id | AD4 |
| Number of Residues | 30 |
| Details | binding site for residue NAP D 801 |
| Chain | Residue |
| D | LYS84 |
| D | PRO86 |
| D | ASN87 |
| D | ILE88 |
| D | SER89 |
| D | ASN137 |
| D | ARG141 |
| D | ILE350 |
| D | ALA353 |
| D | THR564 |
| D | ALA566 |
| D | GLY586 |
| D | GLY587 |
| D | SER588 |
| D | ALA589 |
| D | PRO590 |
| D | LYS591 |
| D | HIS592 |
| D | ARG603 |
| D | TRP604 |
| D | ASP605 |
| D | ARG652 |
| D | MLA802 |
| D | EDO804 |
| D | HOH919 |
| D | HOH920 |
| D | HOH928 |
| D | HOH938 |
| D | HOH943 |
| D | HOH958 |
| site_id | AD5 |
| Number of Residues | 9 |
| Details | binding site for residue MLA D 802 |
| Chain | Residue |
| D | SER89 |
| D | SER134 |
| D | ASN137 |
| D | ARG141 |
| D | LYS257 |
| D | TYR422 |
| D | ARG550 |
| D | ASP551 |
| D | NAP801 |
| site_id | AD6 |
| Number of Residues | 3 |
| Details | binding site for residue GOL D 803 |
| Chain | Residue |
| D | VAL334 |
| D | SER336 |
| D | TYR366 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue EDO D 804 |
| Chain | Residue |
| D | ILE559 |
| D | GLY563 |
| D | THR564 |
| D | SER565 |
| D | NAP801 |
| D | HOH943 |
