5KNC
Crystal structure of the 3 ADP-bound V1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | V-type sodium ATPase catalytic subunit A | polymer | 600 | 66347.8 | 3 | UniProt (Q08636) Pfam (PF02874) Pfam (PF16886) Pfam (PF00006) Pfam (PF22919) | Enterococcus hirae ATCC 9790 | Na(+)-translocating ATPase subunit A,V-type sodium pump catalytic subunit A |
| 2 | D, E, F (D, E, F) | V-type sodium ATPase subunit B | polymer | 465 | 51720.9 | 3 | UniProt (Q08637) Pfam (PF02874) Pfam (PF00006) Pfam (PF22919) | Enterococcus hirae ATCC 9790 | Na(+)-translocating ATPase subunit B,V-type sodium pump subunit B |
| 3 | G (G) | V-type sodium ATPase subunit D | polymer | 217 | 25119.0 | 1 | UniProt (P43435) Pfam (PF01813) | Enterococcus hirae ATCC 9790 | Na(+)-translocating ATPase subunit D,V-type sodium pump subunit D |
| 4 | H (H) | V-type sodium ATPase subunit NtpG (F) | polymer | 115 | 12689.3 | 1 | UniProt (P43455) Pfam (PF01990) | Enterococcus hirae ATCC 9790 | V-type sodium ATPase subunit G,Na(+)-translocating ATPase subunit G,V-type sodium pump subunit G |
| 5 | I, R, Y (A, B, C) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 6 | J (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 7 | K, S, Z (A, B, C) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 3 | Chemie (ADP) | |||
| 8 | AA, BA, CA, L, M... (D, F, A, B) | GLYCEROL | non-polymer | 92.1 | 14 | Chemie (GOL) | |||
| 9 | DA, EA, FA, GA, HA... (A, B, C, D, E...) | water | water | 18.0 | 72 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 593 (UniProt: Q08636)
D, E, F: 1 - 458 (UniProt: Q08637)
G: 1 - 210 (UniProt: P43435)
H: 1 - 103 (UniProt: P43455)
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ser 104 | - | expression tag |
| Gly 105 | - | expression tag |
| Pro 106 | - | expression tag |
| Ser 107 | - | expression tag |
| Ser 108 | - | expression tag |
| Gly 109 | - | expression tag |
| Glu 110 | - | expression tag |
| Asn 111 | - | expression tag |
| Leu 112 | - | expression tag |
| Tyr 113 | - | expression tag |
| Phe 114 | - | expression tag |
| Gln 115 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 392014.5 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 2739.9 | |
| All* | Total formula weight | 394754.4 |
