5KH7
Crystal structure of fragment (3-[6-Oxo-3-(3-pyridinyl)-1(6H)-pyridazinyl]propanoic acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Histone deacetylase 6 | polymer | 107 | 11932.6 | 1 | UniProt (Q9UBN7) Pfam (PF02148) | Homo sapiens (Human) | HD6 |
| 2 | B, C, D (A) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 3 | E (A) | 3-(6-oxidanylidene-3-pyridin-3-yl-pyridazin-1-yl)propanoic acid | non-polymer | 245.2 | 1 | Chemie (6T7) | |||
| 4 | F, G, H, I, J... (A) | UNKNOWN ATOM OR ION | non-polymer | 15 | Chemie (UNX) | ||||
| 5 | U (A) | water | water | 18.0 | 115 | Chemie (HOH) |
Sequence modifications
A: 1109 - 1213 (UniProt: Q9UBN7)
| PDB | External Database | Details |
|---|---|---|
| Gly 1107 | - | expression tag |
| Ser 1108 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 11932.6 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 441.5 | |
| All* | Total formula weight | 12374.1 |
