5KDU
ZmpB metallopeptidase in complex with a2,6-Sialyl T-antigen
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | F5/8 type C domain protein | polymer | 530 | 60080.9 | 1 | UniProt (A0A0H2YN38) Pfam (PF13402) In PDB | Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) | Metallopeptidase |
2 | B | beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 674.6 | 1 | In PDB GlyTouCan (G56682BC) | |||
3 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
4 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
5 | A | SERINE | non-polymer | 105.1 | 1 | Chemie (SER) | |||
6 | water | water | 18.0 | 489 | Chemie (HOH) |
Sequence modifications
A: 497 - 1003 (UniProt: A0A0H2YN38)
PDB | External Database | Details |
---|---|---|
Met 474 | - | initiating methionine |
Gly 475 | - | expression tag |
Ser 476 | - | expression tag |
Ser 477 | - | expression tag |
His 478 | - | expression tag |
His 479 | - | expression tag |
His 480 | - | expression tag |
His 481 | - | expression tag |
His 482 | - | expression tag |
His 483 | - | expression tag |
Ser 484 | - | expression tag |
Ser 485 | - | expression tag |
Gly 486 | - | expression tag |
Leu 487 | - | expression tag |
Val 488 | - | expression tag |
Pro 489 | - | expression tag |
Arg 490 | - | expression tag |
Gly 491 | - | expression tag |
Ser 492 | - | expression tag |
His 493 | - | expression tag |
Met 494 | - | expression tag |
Ala 495 | - | expression tag |
Ser 496 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 60080.9 | |
Branched | Number of molecules | 1 |
Total formula weight | 674.6 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 729.1 | |
All* | Total formula weight | 61484.6 |