5JUU
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 18S ribosomal RNA | polymer | 1798 | 579126.6 | 1 | GenBank (874346701) | Saccharomyces cerevisiae (Baker's yeast) | |
| 2 | B (B) | 25S ribosomal RNA | polymer | 3396 | 1097493.9 | 1 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
| 3 | C (C) | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (1043567390) | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | D (D) | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (1039022949) | Saccharomyces cerevisiae (Baker's yeast) | |
| 5 | E (E) | uL1 (yeast L1) | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) Pfam (PF00687) | Saccharomyces cerevisiae (Baker's yeast) | |
| 6 | F (F) | uL2 (yeast L2) | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | |
| 7 | G (G) | uL3 (yeast L3) | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | |
| 8 | H (H) | uL4 (yeast L4) | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (Baker's yeast) | |
| 9 | I (I) | uL18 (yeast L5) | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (Baker's yeast) | |
| 10 | J (J) | eL6 (yeast L6) | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (Baker's yeast) | |
| 11 | K (K) | uL30 (yeast L7) | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (Baker's yeast) | |
| 12 | L (L) | eL8 (yeast L8) | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 13 | M (M) | uL6 (yeast L9) | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | |
| 14 | N (N) | uL16 (yeast L10) | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | |
| 15 | O (O) | uL5 (yeast L11) | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | |
| 16 | P (P) | uL11 (yeast L12) | polymer | 165 | 17850.6 | 1 | UniProt (P0CX53) Pfam (PF03946) Pfam (PF00298) | Saccharomyces cerevisiae (Baker's yeast) | |
| 17 | Q (Q) | eL13 (yeast L13) | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (Baker's yeast) | |
| 18 | R (R) | eL14 (yeast L14) | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (Baker's yeast) | |
| 19 | S (S) | eL15 (yeast L15) | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (Baker's yeast) | |
| 20 | T (T) | uL13 (yeast L16) | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | |
| 21 | U (U) | uL22 (yeast L17) | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | |
| 22 | V (V) | eL18 (yeast L18) | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (Baker's yeast) | |
| 23 | W (W) | eL19 (yeast L19) | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) Pfam (PF25476) | Saccharomyces cerevisiae (Baker's yeast) | |
| 24 | X (X) | eL20 (yeast L20) | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (Baker's yeast) | |
| 25 | Y (Y) | eL21 (yeast L21) | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (Baker's yeast) | |
| 26 | Z (Z) | eL22 (yeast L22) | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (Baker's yeast) | |
| 27 | AA (AA) | uL14 (yeast L23) | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | |
| 28 | BA (BA) | eL24 (yeast L24) | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (Baker's yeast) | |
| 29 | CA (CA) | uL23 (yeast L25) | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | |
| 30 | DA (DA) | uL24 (yeast L26) | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | |
| 31 | EA (EA) | eL27 (yeast L27) | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (Baker's yeast) | |
| 32 | FA (FA) | uL15 (yeast L28) | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | |
| 33 | GA (GA) | eL29 (yeast L29) | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (Baker's yeast) | |
| 34 | HA (HA) | eL30 (yeast L30) | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 35 | IA (IA) | eL31 (yeast L31) | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (Baker's yeast) | |
| 36 | JA (JA) | eL32 (yeast L32) | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (Baker's yeast) | |
| 37 | KA (KA) | eL33 (yeast L33) | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (Baker's yeast) | |
| 38 | LA (LA) | eL34 (yeast L34) | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (Baker's yeast) | |
| 39 | MA (MA) | uL29 (yeast L35) | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (Baker's yeast) | |
| 40 | NA (NA) | eL36 (yeast L36) | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (Baker's yeast) | |
| 41 | OA (OA) | eL37 (yeast L37) | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (Baker's yeast) | |
| 42 | PA (PA) | eL38 (yeast L38) | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (Baker's yeast) | |
| 43 | QA (QA) | eL39 (yeast L39) | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (Baker's yeast) | |
| 44 | RA (RA) | eL40 (yeast L40) | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae (Baker's yeast) | |
| 45 | SA (SA) | eL41 (yeast L41) | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) | Saccharomyces cerevisiae (Baker's yeast) | |
| 46 | TA (TA) | eL42 (yeast L42) | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (Baker's yeast) | |
| 47 | UA (UA) | eL43 (yeast L43) | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (Baker's yeast) | |
| 48 | VA (VA) | uL10 (yeast P0) | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae (Baker's yeast) | |
| 49 | WA (WA) | RACK1 (yeast Asc1) | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (Baker's yeast) | |
| 50 | XA (XA) | uS2 (yeast S0) | polymer | 252 | 28051.3 | 1 | UniProt (B3LI22) Pfam (PF00318) UniProt (by SIFTS) (P32905) | Saccharomyces cerevisiae (Baker's yeast) | |
| 51 | YA (YA) | eS1 (yeast S1) | polymer | 255 | 28798.5 | 1 | UniProt (B3RHV0) Pfam (PF01015) UniProt (by SIFTS) (P33442) | Saccharomyces cerevisiae (Baker's yeast) | |
| 52 | ZA (ZA) | uS5 (yeast S2) | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (Baker's yeast) | |
| 53 | AB (AB) | uS3 (yeast S3) | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae (Baker's yeast) | |
| 54 | BB (BB) | eS4 (yeast S4) | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF16121) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | |
| 55 | CB (CB) | uS7 (yeast S5) | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) | Saccharomyces cerevisiae (Baker's yeast) | |
| 56 | DB (DB) | eS6 (yeast S6) | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae (Baker's yeast) | |
| 57 | EB (EB) | eS7 (yeast S7) | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae (Baker's yeast) | |
| 58 | FB (FB) | eS8 (yeast S8) | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae (Baker's yeast) | |
| 59 | GB (GB) | uS4 (yeast S9) | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (Baker's yeast) | |
| 60 | HB (HB) | eS10 (yeast S10) | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae (Baker's yeast) | |
| 61 | IB (IB) | uS17 (yeast S11) | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae (Baker's yeast) | |
| 62 | JB (JB) | eS12 (yeast S12) | polymer | 143 | 15488.6 | 1 | UniProt (P48589) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 63 | KB (KB) | uS15 (yeast S13) | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (Baker's yeast) | |
| 64 | LB (LB) | uS11 (yeast S14) | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (Baker's yeast) | |
| 65 | MB (MB) | uS19 (yeast S15) | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae (Baker's yeast) | |
| 66 | NB (NB) | uS9 (yeast S16) | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae (Baker's yeast) | |
| 67 | OB (OB) | eS17 (yeast S17) | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) | Saccharomyces cerevisiae (Baker's yeast) | |
| 68 | PB (PB) | uS13 (yeast S18) | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae (Baker's yeast) | |
| 69 | QB (QB) | eS19 (yeast S19) | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (Baker's yeast) | |
| 70 | RB (RB) | uS10 (yeast S20) | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae (Baker's yeast) | |
| 71 | SB (SB) | eS21 (yeast S21) | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (Baker's yeast) | |
| 72 | TB (TB) | uS8 (yeast S22) | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae (Baker's yeast) | |
| 73 | UB (UB) | uS12 (yeast S23) | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae (Baker's yeast) | |
| 74 | VB (VB) | eS24 (yeast S24) | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae (Baker's yeast) | |
| 75 | WB (WB) | eS25 (yeast S25) | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae (Baker's yeast) | |
| 76 | XB (XB) | eS26 (yeast S26) | polymer | 119 | 13538.9 | 1 | UniProt (P39938) Pfam (PF01283) | Saccharomyces cerevisiae (Baker's yeast) | |
| 77 | YB (YB) | eS27 (yeast S27) | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (Baker's yeast) | |
| 78 | ZB (ZB) | eS28 (yeast S28) | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) Pfam (PF01200) | Saccharomyces cerevisiae (Baker's yeast) | |
| 79 | AC (AC) | uS14 (yeast S29) | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae (Baker's yeast) | |
| 80 | BC (BC) | eS30 (yeast S30) | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae (Baker's yeast) | |
| 81 | CC (CC) | eS31 (yeast S31) | polymer | 152 | 17254.2 | 1 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) | Saccharomyces cerevisiae (Baker's yeast) | |
| 82 | DC (DC) | yeast eEF2 | polymer | 842 | 93549.3 | 1 | UniProt (P32324) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Saccharomyces cerevisiae (Baker's yeast) | |
| 83 | EC (EC) | IRES | polymer | 201 | 64644.3 | 1 | GenBank (14701764) | Taura syndrome virus | |
| 84 | FC (DC) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 85 | GC (DC) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 86 | HC (DC) | [1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID | non-polymer | 494.6 | 1 | Chemie (SO1) PubChem (21733145) PubChem (49867668) PubChem (447250) PubChem (3359496) PubChem (168477224) PubChem (168719769) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 83 |
| Total formula weight | 3339528.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 962.1 | |
| All* | Total formula weight | 3340490.8 |
