5JUU
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 18S ribosomal RNA | polymer | 1798 | 579126.6 | 1 | GenBank (874346701) | Saccharomyces cerevisiae (Baker's yeast) | |
| 2 | B (B) | 25S ribosomal RNA | polymer | 3396 | 1097493.9 | 1 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
| 3 | C (C) | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (1043567390) | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | D (D) | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (1039022949) | Saccharomyces cerevisiae (Baker's yeast) | |
| 5 | E (E) | uL1 (yeast L1) | polymer | 217 | 24524.8 | 1 | UniProt (P0CX43) Pfam (PF00687) | Saccharomyces cerevisiae (Baker's yeast) | |
| 6 | F (F) | uL2 (yeast L2) | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | |
| 7 | G (G) | uL3 (yeast L3) | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | |
| 8 | H (H) | uL4 (yeast L4) | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (Baker's yeast) | |
| 9 | I (I) | uL18 (yeast L5) | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (Baker's yeast) | |
| 10 | J (J) | eL6 (yeast L6) | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (Baker's yeast) | |
| 11 | K (K) | uL30 (yeast L7) | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (Baker's yeast) | |
| 12 | L (L) | eL8 (yeast L8) | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 13 | M (M) | uL6 (yeast L9) | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | |
| 14 | N (N) | uL16 (yeast L10) | polymer | 221 | 25410.5 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | |
| 15 | O (O) | uL5 (yeast L11) | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | |
| 16 | P (P) | uL11 (yeast L12) | polymer | 165 | 17850.6 | 1 | UniProt (P0CX53) Pfam (PF03946) Pfam (PF00298) | Saccharomyces cerevisiae (Baker's yeast) | |
| 17 | Q (Q) | eL13 (yeast L13) | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (Baker's yeast) | |
| 18 | R (R) | eL14 (yeast L14) | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (Baker's yeast) | |
| 19 | S (S) | eL15 (yeast L15) | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (Baker's yeast) | |
| 20 | T (T) | uL13 (yeast L16) | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | |
| 21 | U (U) | uL22 (yeast L17) | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | |
| 22 | V (V) | eL18 (yeast L18) | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (Baker's yeast) | |
| 23 | W (W) | eL19 (yeast L19) | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae (Baker's yeast) | |
| 24 | X (X) | eL20 (yeast L20) | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (Baker's yeast) | |
| 25 | Y (Y) | eL21 (yeast L21) | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (Baker's yeast) | |
| 26 | Z (Z) | eL22 (yeast L22) | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (Baker's yeast) | |
| 27 | AA (AA) | uL14 (yeast L23) | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | |
| 28 | BA (BA) | eL24 (yeast L24) | polymer | 155 | 17661.7 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (Baker's yeast) | |
| 29 | CA (CA) | uL23 (yeast L25) | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | |
| 30 | DA (DA) | uL24 (yeast L26) | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | |
| 31 | EA (EA) | eL27 (yeast L27) | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (Baker's yeast) | |
| 32 | FA (FA) | uL15 (yeast L28) | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | |
| 33 | GA (GA) | eL29 (yeast L29) | polymer | 59 | 6691.9 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (Baker's yeast) | |
| 34 | HA (HA) | eL30 (yeast L30) | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 35 | IA (IA) | eL31 (yeast L31) | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (Baker's yeast) | |
| 36 | JA (JA) | eL32 (yeast L32) | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (Baker's yeast) | |
| 37 | KA (KA) | eL33 (yeast L33) | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (Baker's yeast) | |
| 38 | LA (LA) | eL34 (yeast L34) | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (Baker's yeast) | |
| 39 | MA (MA) | uL29 (yeast L35) | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (Baker's yeast) | |
| 40 | NA (NA) | eL36 (yeast L36) | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (Baker's yeast) | |
| 41 | OA (OA) | eL37 (yeast L37) | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (Baker's yeast) | |
| 42 | PA (PA) | eL38 (yeast L38) | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (Baker's yeast) | |
| 43 | QA (QA) | eL39 (yeast L39) | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (Baker's yeast) | |
| 44 | RA (RA) | eL40 (yeast L40) | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae (Baker's yeast) | |
| 45 | SA (SA) | eL41 (yeast L41) | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) | Saccharomyces cerevisiae (Baker's yeast) | |
| 46 | TA (TA) | eL42 (yeast L42) | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (Baker's yeast) | |
| 47 | UA (UA) | eL43 (yeast L43) | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (Baker's yeast) | |
| 48 | VA (VA) | uL10 (yeast P0) | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae (Baker's yeast) | |
| 49 | WA (WA) | RACK1 (yeast Asc1) | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (Baker's yeast) | |
| 50 | XA (XA) | uS2 (yeast S0) | polymer | 252 | 28051.3 | 1 | UniProt (B3LI22) Pfam (PF00318) UniProt (by SIFTS) (P32905) | Saccharomyces cerevisiae (Baker's yeast) | |
| 51 | YA (YA) | eS1 (yeast S1) | polymer | 255 | 28798.5 | 1 | UniProt (B3RHV0) Pfam (PF01015) UniProt (by SIFTS) (P33442) | Saccharomyces cerevisiae (Baker's yeast) | |
| 52 | ZA (ZA) | uS5 (yeast S2) | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (Baker's yeast) | |
| 53 | AB (AB) | uS3 (yeast S3) | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae (Baker's yeast) | |
| 54 | BB (BB) | eS4 (yeast S4) | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF16121) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | |
| 55 | CB (CB) | uS7 (yeast S5) | polymer | 225 | 25072.6 | 1 | UniProt (P26783) Pfam (PF00177) | Saccharomyces cerevisiae (Baker's yeast) | |
| 56 | DB (DB) | eS6 (yeast S6) | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae (Baker's yeast) | |
| 57 | EB (EB) | eS7 (yeast S7) | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae (Baker's yeast) | |
| 58 | FB (FB) | eS8 (yeast S8) | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae (Baker's yeast) | |
| 59 | GB (GB) | uS4 (yeast S9) | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (Baker's yeast) | |
| 60 | HB (HB) | eS10 (yeast S10) | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae (Baker's yeast) | |
| 61 | IB (IB) | uS17 (yeast S11) | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae (Baker's yeast) | |
| 62 | JB (JB) | eS12 (yeast S12) | polymer | 143 | 15488.6 | 1 | UniProt (P48589) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | |
| 63 | KB (KB) | uS15 (yeast S13) | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (Baker's yeast) | |
| 64 | LB (LB) | uS11 (yeast S14) | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (Baker's yeast) | |
| 65 | MB (MB) | uS19 (yeast S15) | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae (Baker's yeast) | |
| 66 | NB (NB) | uS9 (yeast S16) | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae (Baker's yeast) | |
| 67 | OB (OB) | eS17 (yeast S17) | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) | Saccharomyces cerevisiae (Baker's yeast) | |
| 68 | PB (PB) | uS13 (yeast S18) | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae (Baker's yeast) | |
| 69 | QB (QB) | eS19 (yeast S19) | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (Baker's yeast) | |
| 70 | RB (RB) | uS10 (yeast S20) | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae (Baker's yeast) | |
| 71 | SB (SB) | eS21 (yeast S21) | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (Baker's yeast) | |
| 72 | TB (TB) | uS8 (yeast S22) | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae (Baker's yeast) | |
| 73 | UB (UB) | uS12 (yeast S23) | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae (Baker's yeast) | |
| 74 | VB (VB) | eS24 (yeast S24) | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae (Baker's yeast) | |
| 75 | WB (WB) | eS25 (yeast S25) | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae (Baker's yeast) | |
| 76 | XB (XB) | eS26 (yeast S26) | polymer | 119 | 13538.9 | 1 | UniProt (P39938) Pfam (PF01283) | Saccharomyces cerevisiae (Baker's yeast) | |
| 77 | YB (YB) | eS27 (yeast S27) | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (Baker's yeast) | |
| 78 | ZB (ZB) | eS28 (yeast S28) | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) Pfam (PF01200) | Saccharomyces cerevisiae (Baker's yeast) | |
| 79 | AC (AC) | uS14 (yeast S29) | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae (Baker's yeast) | |
| 80 | BC (BC) | eS30 (yeast S30) | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae (Baker's yeast) | |
| 81 | CC (CC) | eS31 (yeast S31) | polymer | 152 | 17254.2 | 1 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) | Saccharomyces cerevisiae (Baker's yeast) | |
| 82 | DC (DC) | yeast eEF2 | polymer | 842 | 93549.3 | 1 | UniProt (P32324) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Saccharomyces cerevisiae (Baker's yeast) | |
| 83 | EC (EC) | IRES | polymer | 201 | 64644.3 | 1 | GenBank (14701764) | Taura syndrome virus | |
| 84 | FC (DC) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 85 | GC (DC) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 86 | HC (DC) | [1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID | non-polymer | 494.6 | 1 | Chemie (SO1) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 83 |
| Total formula weight | 3339528.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 962.1 | |
| All* | Total formula weight | 3340490.8 |
