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5JUU

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A18S ribosomal RNApolymer1798579126.61GenBank (874346701)Saccharomyces cerevisiae (Baker's yeast)
2B25S ribosomal RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae (Baker's yeast)
3C5.8S ribosomal RNApolymer15850682.91GenBank (1043567390)Saccharomyces cerevisiae (Baker's yeast)
4D5S ribosomal RNApolymer12138951.11GenBank (1039022949)Saccharomyces cerevisiae (Baker's yeast)
5EuL1 (yeast L1)polymer21724524.81UniProt (P0CX43)
Pfam (PF00687)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
6FuL2 (yeast L2)polymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
7GuL3 (yeast L3)polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
8HuL4 (yeast L4)polymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
9IuL18 (yeast L5)polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
10JeL6 (yeast L6)polymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
11KuL30 (yeast L7)polymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
12LeL8 (yeast L8)polymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
13MuL6 (yeast L9)polymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
14NuL16 (yeast L10)polymer22125410.51UniProt (P41805)
Pfam (PF00252)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
15OuL5 (yeast L11)polymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
16PuL11 (yeast L12)polymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
17QeL13 (yeast L13)polymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
18ReL14 (yeast L14)polymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
19SeL15 (yeast L15)polymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
20TuL13 (yeast L16)polymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
21UuL22 (yeast L17)polymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
22VeL18 (yeast L18)polymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
23WeL19 (yeast L19)polymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
24XeL20 (yeast L20)polymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
25YeL21 (yeast L21)polymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
26ZeL22 (yeast L22)polymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
27AAuL14 (yeast L23)polymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
28BAeL24 (yeast L24)polymer15517661.71UniProt (P04449)
Pfam (PF01246)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
29CAuL23 (yeast L25)polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
30DAuL24 (yeast L26)polymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
31EAeL27 (yeast L27)polymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
32FAuL15 (yeast L28)polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
33GAeL29 (yeast L29)polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
34HAeL30 (yeast L30)polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
35IAeL31 (yeast L31)polymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
36JAeL32 (yeast L32)polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
37KAeL33 (yeast L33)polymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
38LAeL34 (yeast L34)polymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
39MAuL29 (yeast L35)polymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
40NAeL36 (yeast L36)polymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
41OAeL37 (yeast L37)polymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
42PAeL38 (yeast L38)polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
43QAeL39 (yeast L39)polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
44RAeL40 (yeast L40)polymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
45SAeL41 (yeast L41)polymer253354.21UniProt (P0CX86)
Pfam (PF05162)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
46TAeL42 (yeast L42)polymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
47UAeL43 (yeast L43)polymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
48VAuL10 (yeast P0)polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
49WARACK1 (yeast Asc1)polymer31934841.21UniProt (P38011)
Pfam (PF00400)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
50XAuS2 (yeast S0)polymer25228051.31UniProt (B3LI22)
Pfam (PF00318)
UniProt (by SIFTS) (P32905)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
51YAeS1 (yeast S1)polymer25528798.51UniProt (B3RHV0)
Pfam (PF01015)
UniProt (by SIFTS) (P33442)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
52ZAuS5 (yeast S2)polymer25427490.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
53ABuS3 (yeast S3)polymer24026542.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
54BBeS4 (yeast S4)polymer26129469.31UniProt (P0CX35)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
55CBuS7 (yeast S5)polymer22525072.61UniProt (P26783)
Pfam (PF00177)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
56DBeS6 (yeast S6)polymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
57EBeS7 (yeast S7)polymer19021658.21UniProt (P26786)
Pfam (PF01251)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
58FBeS8 (yeast S8)polymer20022537.81UniProt (P0CX39)
Pfam (PF01201)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
59GBuS4 (yeast S9)polymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
60HBeS10 (yeast S10)polymer10512757.41UniProt (Q08745)
Pfam (PF03501)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
61IBuS17 (yeast S11)polymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
62JBeS12 (yeast S12)polymer14315488.61UniProt (P48589)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
63KBuS15 (yeast S13)polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
64LBuS11 (yeast S14)polymer13714562.71UniProt (P06367)
Pfam (PF00411)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
65MBuS19 (yeast S15)polymer14216031.91UniProt (Q01855)
Pfam (PF00203)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
66NBuS9 (yeast S16)polymer14315877.51UniProt (P0CX51)
Pfam (PF00380)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
67OBeS17 (yeast S17)polymer13615820.41UniProt (P02407)
Pfam (PF00833)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
68PBuS13 (yeast S18)polymer14617071.61UniProt (P0CX55)
Pfam (PF00416)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
69QBeS19 (yeast S19)polymer14415942.11UniProt (P07280)
Pfam (PF01090)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
70RBuS10 (yeast S20)polymer12113929.01UniProt (P38701)
Pfam (PF00338)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
71SBeS21 (yeast S21)polymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
72TBuS8 (yeast S22)polymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
73UBuS12 (yeast S23)polymer14516073.91UniProt (P0CX29)
Pfam (PF00164)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
74VBeS24 (yeast S24)polymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
75WBeS25 (yeast S25)polymer10812067.31UniProt (Q3E792)
Pfam (PF03297)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
76XBeS26 (yeast S26)polymer11913538.91UniProt (P39938)
Pfam (PF01283)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
77YBeS27 (yeast S27)polymer828893.41UniProt (P35997)
Pfam (PF01667)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
78ZBeS28 (yeast S28)polymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
79ACuS14 (yeast S29)polymer566675.71UniProt (P41057)
Pfam (PF00253)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
80BCeS30 (yeast S30)polymer637137.51UniProt (P0CX33)
Pfam (PF04758)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
81CCeS31 (yeast S31)polymer15217254.21UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
82DCyeast eEF2polymer84293549.31UniProt (P32324)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
83ECIRESpolymer20164644.31GenBank (14701764)Taura syndrome virus
84DCGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
85DCMAGNESIUM IONnon-polymer24.31Chemie (MG)
86DC[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACIDnon-polymer494.61Chemie (SO1)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3339528.6
Non-Polymers*Number of molecules3
Total formula weight962.1
All*Total formula weight3340490.8
*Water molecules are not included.

217705

PDB entries from 2024-03-27

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