5JNE
E2-SUMO-Siz1 E3-SUMO-PCNA complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3 | polymer | 367 | 42195.4 | 2 | UniProt (Q04195) UniProt (Q12306) Pfam (PF14324) Pfam (PF02891) Pfam (PF00240) | Saccharomyces cerevisiae (Baker's yeast) | SAP and Miz-finger domain-containing protein 1,Ubiquitin-like protein ligase 1 |
| 2 | B, F (B, F) | SUMO-conjugating enzyme UBC9 | polymer | 160 | 18288.8 | 2 | UniProt (P50623) Pfam (PF00179) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ubiquitin carrier protein 9,Ubiquitin-conjugating enzyme E2-18 kDa,Ubiquitin-protein ligase |
| 3 | C, G (C, G) | Ubiquitin-like protein SMT3 | polymer | 84 | 9720.0 | 2 | UniProt (Q12306) Pfam (PF00240) | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | D, H (D, H) | Proliferating cell nuclear antigen | polymer | 258 | 28815.7 | 2 | UniProt (P15873) Pfam (PF00705) Pfam (PF02747) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PCNA |
| 5 | I, Q (A, E) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 6 | J, K, L, N, O... (A, D, E, H) | GLYCEROL | non-polymer | 92.1 | 10 | Chemie (GOL) | |||
| 7 | M, T (B, F) | ethane-1,2-dithiol | non-polymer | 94.2 | 2 | Chemie (6LN) | |||
| 8 | AA, BA, CA, DA, W... (E, F, G, H, A...) | water | water | 18.0 | 271 | Chemie (HOH) |
Sequence modifications
A, E: 167 - 445 (UniProt: Q04195)
A, E: 453 - 531 (UniProt: Q12306)
B, F: 1 - 157 (UniProt: P50623)
C, G: 19 - 98 (UniProt: Q12306)
D, H: 1 - 258 (UniProt: P15873)
| PDB | External Database | Details |
|---|---|---|
| Ser 165 | - | expression tag |
| Leu 166 | - | expression tag |
| Asp 361 | Cys 361 | engineered mutation |
| Asp 446 | - | linker |
| Asp 447 | - | linker |
| Asp 448 | - | linker |
| Asp 449 | - | linker |
| Lys 450 | - | linker |
| Leu 451 | - | linker |
| Arg 452 | - | linker |
B, F: 1 - 157 (UniProt: P50623)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
| Ser 5 | Cys 5 | engineered mutation |
| Lys 129 | Ala 129 | engineered mutation |
| Arg 153 | Lys 153 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Gly 15 | - | expression tag |
| Ser 16 | - | expression tag |
| His 17 | - | expression tag |
| Met 18 | - | expression tag |
| Arg 19 | Lys 19 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Asp 77 | Lys 77 | engineered mutation |
| Glu 81 | Cys 81 | engineered mutation |
| Asp 110 | Arg 110 | engineered mutation |
| Gly 127 | Lys 127 | engineered mutation |
| Cys 164 | Lys 164 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 198039.5 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 1240.2 | |
| All* | Total formula weight | 199279.7 |






