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5JNE

E2-SUMO-Siz1 E3-SUMO-PCNA complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3polymer36742195.42UniProt (Q04195)
UniProt (Q12306)
Pfam (PF14324)
Pfam (PF02891)
Pfam (PF00240)
Saccharomyces cerevisiae (Baker's yeast)SAP and Miz-finger domain-containing protein 1,Ubiquitin-like protein ligase 1
2B, F
(B, F)
SUMO-conjugating enzyme UBC9polymer16018288.82UniProt (P50623)
Pfam (PF00179)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Ubiquitin carrier protein 9,Ubiquitin-conjugating enzyme E2-18 kDa,Ubiquitin-protein ligase
3C, G
(C, G)
Ubiquitin-like protein SMT3polymer849720.02UniProt (Q12306)
Pfam (PF00240)
Saccharomyces cerevisiae (Baker's yeast)
4D, H
(D, H)
Proliferating cell nuclear antigenpolymer25828815.72UniProt (P15873)
Pfam (PF00705)
Pfam (PF02747)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)PCNA
5I, Q
(A, E)
ZINC IONnon-polymer65.42Chemie (ZN)
6J, K, L, N, O...
(A, D, E, H)
GLYCEROLnon-polymer92.110Chemie (GOL)
7M, T
(B, F)
ethane-1,2-dithiolnon-polymer94.22Chemie (6LN)
8AA, BA, CA, DA, W...
(E, F, G, H, A...)
waterwater18.0271Chemie (HOH)
Sequence modifications
A, E: 167 - 445 (UniProt: Q04195)
PDBExternal DatabaseDetails
Ser 165-expression tag
Leu 166-expression tag
Asp 361Cys 361engineered mutation
Asp 446-linker
Asp 447-linker
Asp 448-linker
Asp 449-linker
Lys 450-linker
Leu 451-linker
Arg 452-linker
A, E: 453 - 531 (UniProt: Q12306)
B, F: 1 - 157 (UniProt: P50623)
PDBExternal DatabaseDetails
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Ser 5Cys 5engineered mutation
Lys 129Ala 129engineered mutation
Arg 153Lys 153engineered mutation
C, G: 19 - 98 (UniProt: Q12306)
PDBExternal DatabaseDetails
Gly 15-expression tag
Ser 16-expression tag
His 17-expression tag
Met 18-expression tag
Arg 19Lys 19engineered mutation
D, H: 1 - 258 (UniProt: P15873)
PDBExternal DatabaseDetails
Asp 77Lys 77engineered mutation
Glu 81Cys 81engineered mutation
Asp 110Arg 110engineered mutation
Gly 127Lys 127engineered mutation
Cys 164Lys 164engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight198039.5
Non-Polymers*Number of molecules14
Total formula weight1240.2
All*Total formula weight199279.7
*Water molecules are not included.

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PDB entries from 2024-10-30

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