5JK7
The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | DNA damage-binding protein 1 | polymer | 1140 | 127097.5 | 2 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) In PDB | Homo sapiens (Human) | DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe |
2 | C, E | Protein VPRBP | polymer | 361 | 41178.2 | 2 | UniProt (Q9Y4B6) In PDB | Homo sapiens (Human) | DDB1- and CUL4-associated factor 1,HIV-1 Vpr-binding protein,VprBP,Serine/threonine-protein kinase VPRBP,Vpr-interacting protein |
3 | D, G | Uracil-DNA glycosylase | polymer | 222 | 25383.0 | 2 | UniProt (P13051) Pfam (PF03167) In PDB | Homo sapiens (Human) | UDG |
4 | F, H | Protein Vpr | polymer | 96 | 11396.9 | 2 | UniProt (P12520) Pfam (PF00522) In PDB | Human immunodeficiency virus type 1 group M subtype B (isolate NY5) (HIV-1) | R ORF protein,Viral protein R |
Sequence modifications
C, E: 1045 - 1396 (UniProt: Q9Y4B6)
D, G: 85 - 304 (UniProt: P13051)
PDB | External Database | Details |
---|---|---|
Ala 1044 | - | expression tag |
Leu 1397 | - | expression tag |
Glu 1398 | - | expression tag |
His 1399 | - | expression tag |
His 1400 | - | expression tag |
His 1401 | - | expression tag |
His 1402 | - | expression tag |
His 1403 | - | expression tag |
His 1404 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Val 83 | - | expression tag |
Phe 84 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 410111.1 | |
All* | Total formula weight | 410111.1 |