5JF3
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT018
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Peptide deformylase | polymer | 204 | 22894.3 | 1 | UniProt (Q8E378) Pfam (PF01327) | Streptococcus agalactiae | PDF,Polypeptide deformylase |
| 2 | B (A) | methyl 4-({5-[(3R)-1-(hydroxyamino)-1-oxoheptan-3-yl]-1,2,4-oxadiazol-3-yl}methyl)benzoate | non-polymer | 361.4 | 1 | Chemie (SF5) | |||
| 3 | C (A) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 4 | D (A) | IMIDAZOLE | non-polymer | 69.1 | 1 | Chemie (IMD) | |||
| 5 | E, F, G, H, I... (A) | ZINC ION | non-polymer | 65.4 | 9 | Chemie (ZN) | |||
| 6 | N (A) | water | water | 18.0 | 263 | Chemie (HOH) |
Sequence modifications
A: 1 - 204 (UniProt: Q8E378)
| PDB | External Database | Details |
|---|---|---|
| Ala 2 | Ser 2 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 22894.3 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1078.2 | |
| All* | Total formula weight | 23972.5 |
