5JF2
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT002
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Peptide deformylase | polymer | 204 | 22894.3 | 1 | UniProt (Q8E378) Pfam (PF01327) In PDB | Streptococcus agalactiae | PDF,Polypeptide deformylase |
| 2 | A | (3R)-3-{3-[(4-fluorophenyl)methyl]-1,2,4-oxadiazol-5-yl}-N-hydroxyheptanamide | non-polymer | 321.3 | 1 | Chemie (SF7) | |||
| 3 | A | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 4 | A | IMIDAZOLE | non-polymer | 69.1 | 1 | Chemie (IMD) | |||
| 5 | A | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 6 | water | water | 18.0 | 246 | Chemie (HOH) |
Sequence modifications
A: 1 - 204 (UniProt: Q8E378)
| PDB | External Database | Details |
|---|---|---|
| Ala 2 | Ser 2 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 22894.3 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 972.7 | |
| All* | Total formula weight | 23867.0 |
