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5JF2

Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT002

Functional Information from GO Data
ChainGOidnamespacecontents
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue SF7 A 301
ChainResidue
AGLY69
AGLU175
AHIS178
AZN304
AGLY70
AVAL71
AGLY72
AGLN77
AGLY130
AOCS131
ALEU132
AHIS174

site_idAC2
Number of Residues7
Detailsbinding site for residue ACT A 302
ChainResidue
AHIS145
AGLU158
AASP177
AARG187
AZN308
AHOH425
AHOH511

site_idAC3
Number of Residues9
Detailsbinding site for residue IMD A 303
ChainResidue
AGLU32
AARG147
AVAL148
ALYS163
ALEU164
AHOH401
AHOH403
AHOH521
AHOH611

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN A 304
ChainResidue
AGLN77
AOCS131
AHIS174
AHIS178
ASF7301

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN A 305
ChainResidue
AHIS55
AGLU198
AHOH556
AHOH573
AHOH597

site_idAC6
Number of Residues7
Detailsbinding site for residue ZN A 306
ChainResidue
AHIS118
AASP154
AHOH411
AHOH568
AHOH572
AHOH582
AHOH601

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN A 307
ChainResidue
AASP94
AGLU190
AHOH421
AHOH436
AHOH575

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN A 308
ChainResidue
AHIS145
AGLU158
AACT302
AHOH560

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN A 309
ChainResidue
AHIS12
AASP18
AHOH453
AHOH497
AHOH577

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN A 310
ChainResidue
AGLU43
AGLU47
AHOH496
AHOH562

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN A 311
ChainResidue
AGLU102
AGLU151
AHOH571
AHOH598

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00163
ChainResidueDetails
AGLU175

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00163
ChainResidueDetails
AOCS131
AHIS174
AHIS178

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PDB entries from 2024-07-31

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