5JBH
Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 2 | 16S ribosomal RNA | polymer | 1518 | 492800.8 | 1 | Pyrococcus abyssi GE5 | ||
| 2 | Z | 30S ribosomal protein uS3 | polymer | 210 | 23464.4 | 1 | Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (Q8U004) In PDB | Pyrococcus abyssi GE5 | |
| 3 | 3 | 50S ribosomal protein uL30 | polymer | 123 | 13414.7 | 1 | Pfam (PF01248) UniProt (by SIFTS) (P62008) In PDB | Pyrococcus abyssi GE5 | |
| 4 | L | 30S ribosomal protein uS10 | polymer | 102 | 11769.7 | 1 | Pfam (PF00338) UniProt (by SIFTS) (P61885) In PDB | Pyrococcus abyssi GE5 | |
| 5 | O | 30S ribosomal protein uS13 | polymer | 148 | 16948.9 | 1 | Pfam (PF00416) UniProt (by SIFTS) (Q8U0E2) In PDB | Pyrococcus abyssi GE5 | |
| 6 | P | 30S ribosomal protein uS14 | polymer | 56 | 6634.0 | 1 | Pfam (PF00253) UniProt (by SIFTS) (Q8U013) In PDB | Pyrococcus abyssi GE5 | |
| 7 | S | 30S ribosomal protein eS17 | polymer | 67 | 7942.5 | 1 | Pfam (PF00833) UniProt (by SIFTS) (Q8U0U1) In PDB | Pyrococcus abyssi GE5 | |
| 8 | T | 30S ribosomal protein uS19 | polymer | 132 | 15357.4 | 1 | Pfam (PF00203) UniProt (by SIFTS) (Q8U002) In PDB | Pyrococcus abyssi GE5 | |
| 9 | U | 30S ribosomal protein eS19 | polymer | 150 | 17394.2 | 1 | Pfam (PF01090) UniProt (by SIFTS) (Q9V0G8) In PDB | Pyrococcus abyssi GE5 | |
| 10 | X | 30S ribosomal protein eS28 | polymer | 71 | 8116.3 | 1 | Pfam (PF01200) UniProt (by SIFTS) (Q8U159) In PDB | Pyrococcus abyssi GE5 | |
| 11 | Y | 30S ribosomal protein eS27 | polymer | 50 | 5865.0 | 1 | Pfam (PF01599) UniProt (by SIFTS) (Q8U443) In PDB | Pyrococcus abyssi GE5 | |
| 12 | H | 30S ribosomal protein uS7 | polymer | 215 | 24701.8 | 1 | Pfam (PF00177) UniProt (by SIFTS) (Q8U0M8) In PDB | Pyrococcus abyssi GE5 | |
| 13 | K | 30S ribosomal protein uS9 | polymer | 135 | 15317.9 | 1 | Pfam (PF00380) UniProt (by SIFTS) (Q8U0E7) In PDB | Pyrococcus abyssi GE5 | |
| 14 | M | 30S ribosomal protein uS11 | polymer | 137 | 14757.0 | 1 | Pfam (PF00411) UniProt (by SIFTS) (Q8U0E3) In PDB | Pyrococcus abyssi GE5 | |
| 15 | N | 30S ribosomal protein uS12 | polymer | 147 | 16477.6 | 1 | Pfam (PF00164) UniProt (by SIFTS) (P61994) In PDB | Pyrococcus abyssi GE5 | |
| 16 | Q | 30S ribosomal protein uS15 | polymer | 158 | 18640.0 | 1 | Pfam (PF08069) Pfam (PF00312) UniProt (by SIFTS) (Q8TZD9) In PDB | Pyrococcus abyssi GE5 | |
| 17 | R | 30S ribosomal protein uS17 | polymer | 113 | 13296.5 | 1 | Pfam (PF00366) UniProt (by SIFTS) (Q8U008) In PDB | Pyrococcus abyssi GE5 | |
| 18 | A | 30S ribosomal protein uS3 | polymer | 198 | 22984.1 | 1 | Pfam (PF01015) UniProt (by SIFTS) (Q8TZE1) In PDB | Pyrococcus abyssi GE5 | |
| 19 | B | 30S ribosomal protein uS2 | polymer | 202 | 23039.9 | 1 | Pfam (PF00318) UniProt (by SIFTS) (Q8U0F0) In PDB | Pyrococcus abyssi GE5 | |
| 20 | V | 30S ribosomal protein eS24 | polymer | 99 | 11698.6 | 1 | Pfam (PF01282) UniProt (by SIFTS) (Q8U442) In PDB | Pyrococcus abyssi GE5 | |
| 21 | W | 30S ribosomal protein eS27 | polymer | 63 | 6888.4 | 1 | Pfam (PF01667) UniProt (by SIFTS) (Q8U474) In PDB | Pyrococcus abyssi GE5 | |
| 22 | D | 30S ribosomal protein uS4 | polymer | 180 | 21381.9 | 1 | Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P61992) In PDB | Pyrococcus abyssi GE5 | |
| 23 | E | 30S ribosomal protein eS4 | polymer | 243 | 28197.0 | 1 | Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) UniProt (by SIFTS) (Q8U011) In PDB | Pyrococcus abyssi GE5 | |
| 24 | F | 30S ribosomal protein uS5 | polymer | 236 | 26590.9 | 1 | Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q8U017) In PDB | Pyrococcus abyssi GE5 | |
| 25 | G | 30S ribosomal protein eS6 | polymer | 125 | 14002.3 | 1 | Pfam (PF01092) UniProt (by SIFTS) (Q8U3H8) In PDB | Pyrococcus abyssi GE5 | |
| 26 | I | 30S ribosomal protein uS8 | polymer | 130 | 14684.2 | 1 | Pfam (PF00410) UniProt (by SIFTS) (Q8U014) In PDB | Pyrococcus abyssi GE5 | |
| 27 | J | 30S ribosomal protein eS8 | polymer | 127 | 14293.7 | 1 | Pfam (PF01201) UniProt (by SIFTS) (Q8U1Y5) In PDB | Pyrococcus abyssi GE5 | |
| 28 | C | 30S ribosomal protein SX | polymer | 57 | 4869.0 | 1 | Pyrococcus abyssi GE5 | ||
| 29 | 0 | 30S ribosomal protein eL41 | polymer | 22 | 3050.8 | 1 | UniProt (by SIFTS) (Q8U232) In PDB | Pyrococcus abyssi GE5 | |
| 30 | 5 | mRNA | polymer | 26 | 8394.0 | 1 | Pyrococcus | ||
| 31 | 1 | aIF1 | polymer | 102 | 11621.8 | 1 | Pfam (PF01253) UniProt (by SIFTS) (Q57902) In PDB | Pyrococcus abyssi GE5 | |
| 32 | 4 | initiator Met-tRNA fMet from E. coli (A1U72 variant) | polymer | 76 | 24488.6 | 1 | Escherichia coli | ||
| 33 | 6 | aIF1A | polymer | 113 | 13078.3 | 1 | Pfam (PF01176) UniProt (by SIFTS) (Q9V138) In PDB | Pyrococcus abyssi GE5 | |
| 34 | 7 | aIF2-gamma | polymer | 415 | 45849.2 | 1 | Pfam (PF00009) Pfam (PF09173) UniProt (by SIFTS) (Q980A5) In PDB | Pyrococcus abyssi GE5 | |
| 35 | 8 | aIF2-beta | polymer | 139 | 15942.7 | 1 | Pfam (PF01873) UniProt (by SIFTS) (Q97W59) In PDB | Pyrococcus abyssi GE5 | |
| 36 | 9 | aIF2-alpha | polymer | 266 | 30432.4 | 1 | Pfam (PF00575) Pfam (PF07541) UniProt (by SIFTS) (Q97Z79) In PDB | Pyrococcus abyssi GE5 | |
| 37 | 4 | METHIONINE | non-polymer | 149.2 | 1 | Chemie (MET) | |||
| 38 | 7 | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 39 | 7 | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
| 40 | 8 | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1064386.5 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 761.1 | |
| All* | Total formula weight | 1065147.6 |
