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5J2P

HIV-1 reverse transcriptase in complex with DNA that has incorporated EFdA-MP at the P-(post-translocation) site and a second EFdA-MP at the N-(pre-translocation) site

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
reverse transcriptase, p66 domainpolymer56064521.91UniProt (P04585)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Pfam (PF00075)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)Pr160Gag-Pol
2B
(B)
reverse transcriptase, p51 domainpolymer44051383.01UniProt (P04585)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)Pr160Gag-Pol
3C
(P)
DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(6FM)P*(6FM))-3')polymer226871.51Human immunodeficiency virus 1
4D
(T)
DNA (27-MER)polymer278398.41Human immunodeficiency virus 1
5E
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
6F, G
(P)
2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)non-polymer373.22Chemie (6FM)
7H, I, J, K
(A, B, P, T)
waterwater18.0420Chemie (HOH)
Sequence modifications
A: 1 - 560 (UniProt: P04585)
PDBExternal DatabaseDetails
Cys 258Gln 845engineered mutation
Ser 280Cys 867engineered mutation
B: 1 - 440 (UniProt: P04585)
PDBExternal DatabaseDetails
Ser 280Cys 867engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight131174.8
Non-Polymers*Number of molecules3
Total formula weight770.8
All*Total formula weight131945.5
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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